Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq19 735 0.0 >seq19 Length=72585 Score = 735 bits (814), Expect = 0.0 Identities = 749/984 (76%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 103166 TCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATA 103225 ||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 11166 TCTACAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 11107 Query 103226 CCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCA 103285 || || ||| ||||| | | || ||||| ||||| | ||||| || | ||| Sbjct 11106 CCGAGGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCT 11047 Query 103286 AGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGT 103345 | | ||||||||||||||||||||||| |||||||| ||||| || || ||| | Sbjct 11046 ACTACAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATA 10987 Query 103346 GCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAG 103405 || ||||||||||| |||| |||||| | ||| Sbjct 10986 GCTGTGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAG 10927 Query 103406 TTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATG 103465 ||||||||||| |||||||||||||| | ||| ||||||||||| || || ||||||||| Sbjct 10926 TTGTTGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATG 10867 Query 103466 TTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTC 103525 ||||| |||||||| ||||||||||||||||| || |||| ||| || | ||||| Sbjct 10866 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTA 10807 Query 103526 GTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCA 103585 |||||||| | || || || || || || ||||||||||| ||| ||| ||||||||| Sbjct 10806 GTCTCACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCA 10747 Query 103586 CCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCT 103645 ||||| || |||||||| || ||||||||||| |||||||| || ||||| || || || Sbjct 10746 CCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 10687 Query 103646 TGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAAC 103705 ||||| || | |||| ||||||| ||||| |||||||| | |||||| |||| ||||| Sbjct 10686 TGGAATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAA 10627 Query 103706 GAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAG 103765 ||||| ||||| | ||||| || | |||||| || | || || || |||||||||||| Sbjct 10626 GAACCCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAG 10567 Query 103766 TATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCC 103825 || || ||| ||||| || ||||| || | |||| | || | ||||||||||| ||| Sbjct 10566 TAAGCTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCC 10507 Query 103826 ATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTA 103885 || |||| | | || || |||| |||||| |||| | ||| ||| ||||||||||||| Sbjct 10506 ATGTATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTG 10447 Query 103886 TACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCG 103945 || ||||||||||||||||| ||||||||||| || || ||||||||||| || || ||| Sbjct 10446 TAAAGCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCG 10387 Query 103946 TTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCG 104005 || || | || | || |||||||||||||||||||| |||||||| ||||| |||| Sbjct 10386 TTAGATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGAT 10327 Query 104006 ACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA- 104064 || || ||||| || || |||||||| || ||||| || || | || || |||||||| Sbjct 10326 ACTGGCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAAT 10267 Query 104065 GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAG 104124 | || ||||| | | | ||| |||||||| | || ||||||||||| | || || Sbjct 10266 ACTGA-AGTTGCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAAAG 10208 Query 104125 ACGGTTGTTTGTCGATGTAACCCA 104148 |||||| | || || |||| ||| Sbjct 10207 ACGGTTCTCAGTTGAAGTAATCCA 10184 Score = 735 bits (814), Expect = 0.0 Identities = 749/984 (76%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 103166 TCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATA 103225 ||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 35977 TCTACAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 36036 Query 103226 CCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCA 103285 || || ||| ||||| | | || ||||| ||||| | ||||| || | ||| Sbjct 36037 CCGAGGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCT 36096 Query 103286 AGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGT 103345 | | ||||||||||||||||||||||| |||||||| ||||| || || ||| | Sbjct 36097 ACTACAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATA 36156 Query 103346 GCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAG 103405 || ||||||||||| |||| |||||| | ||| Sbjct 36157 GCTGTGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAG 36216 Query 103406 TTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATG 103465 ||||||||||| |||||||||||||| | ||| ||||||||||| || || ||||||||| Sbjct 36217 TTGTTGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATG 36276 Query 103466 TTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTC 103525 ||||| |||||||| ||||||||||||||||| || |||| ||| || | ||||| Sbjct 36277 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTA 36336 Query 103526 GTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCA 103585 |||||||| | || || || || || || ||||||||||| ||| ||| ||||||||| Sbjct 36337 GTCTCACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCA 36396 Query 103586 CCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCT 103645 ||||| || |||||||| || ||||||||||| |||||||| || ||||| || || || Sbjct 36397 CCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 36456 Query 103646 TGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAAC 103705 ||||| || | |||| ||||||| ||||| |||||||| | |||||| |||| ||||| Sbjct 36457 TGGAATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAA 36516 Query 103706 GAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAG 103765 ||||| ||||| | ||||| || | |||||| || | || || || |||||||||||| Sbjct 36517 GAACCCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAG 36576 Query 103766 TATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCC 103825 || || ||| ||||| || ||||| || | |||| | || | ||||||||||| ||| Sbjct 36577 TAAGCTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCC 36636 Query 103826 ATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTA 103885 || |||| | | || || |||| |||||| |||| | ||| ||| ||||||||||||| Sbjct 36637 ATGTATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTG 36696 Query 103886 TACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCG 103945 || ||||||||||||||||| ||||||||||| || || ||||||||||| || || ||| Sbjct 36697 TAAAGCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCG 36756 Query 103946 TTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCG 104005 || || | || | || |||||||||||||||||||| |||||||| ||||| |||| Sbjct 36757 TTAGATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGAT 36816 Query 104006 ACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA- 104064 || || ||||| || || |||||||| || ||||| || || | || || |||||||| Sbjct 36817 ACTGGCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAAT 36876 Query 104065 GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAG 104124 | || ||||| | | | ||| |||||||| | || ||||||||||| | || || Sbjct 36877 ACTGA-AGTTGCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAAAG 36935 Query 104125 ACGGTTGTTTGTCGATGTAACCCA 104148 |||||| | || || |||| ||| Sbjct 36936 ACGGTTCTCAGTTGAAGTAATCCA 36959 Score = 614 bits (680), Expect = 7e-171 Identities = 750/1018 (74%), Gaps = 4/1018 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | |||||| ||||| ||||||| ||||||||| || ||||| Sbjct 3007 AGAGCGTTTCCACGTGGAAGTACCTCCTCAGGGAATACAAGGTTTTCATGAGGCTGATCT 2948 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | ||||| ||||||||| | |||||| || | || || ||||| |||||||| || Sbjct 2947 TGAGCTGCCATCCATGCACGAATACCTTCGTTAAGAAGAATATTCTTAGTGTAGAATGTT 2888 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || ||||| |||||||| ||||| | ||||||||| ||||| ||||| || ||||| ||| Sbjct 2887 TCAAACTCAGGATCTTCAGCTGCACGGATCTCTTGTGATACGAAGTCGTATGCACGGAGG 2828 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || || || | || | || ||| | | |||| | || | ||||| || || Sbjct 2827 TTAAGTGCTAATCCTACAACACCAAGTGCTGACATCCATAACCCTGTTACAGGTACGAAA 2768 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 ||||||||||| || | ||| | ||| ||| || || | ||| || || || |||||| Sbjct 2767 AGCATAAAGAAGTGAAGCCAACGCTTGTTAGAGAAAGCTACACCGAAAATCTGTGACCAG 2708 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 |||||||||||||| |||||||| ||||||||||| |||| || | | ||||| | Sbjct 2707 AAACGGTTTGCTGTTACCATTGAGTAAGTCTCTTCAGCTTGAGTTGGGTTAAATGCACGG 2648 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 |||||||||| |||||||||||| | || |||||||| ||||| | ||||| || Sbjct 2647 AAAGTGTTTGAACCATCACCATCTTCGAAAAGTGTGTTCTCTACAGTTGCTCCGTGAATC 2588 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | || |||||| |||| || | ||| || || |||||||| ||||||||||| || Sbjct 2587 GCACAAAGAAGTGCTGCTCCAAGTACACCAGCTACTCCCATCATGTGGAATGGGTTAAGT 2528 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 |||||||| ||||| || || | ||| || | ||| | || || | || |||||||| Sbjct 2527 GTCCAGTTGTGGAACCCTTGGAAGAAAAGAATGAAACGGAAAATTCCCGCTACACCAAAT 2468 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || || ||||||||||| | || ||||| || || || || || || ||| ||||| Sbjct 2467 GAAGGTGCAAAGAACCATCCTGATTGTCCAAGTGGGTAAATAAGGAATACAGATACAAAT 2408 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||||||||| | ||||| ||||| || ||||||||||||||| | | | || Sbjct 2407 ACAGCGATAGGTGCTGAGAATGCAATCGCGTTGTACGGACGAATTTGTACTGCACGTGCA 2348 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| ||||| || || || | | ||||||||||| || || || || Sbjct 2347 ATTTCAAATTGACGGAGCATAAATCCGATTAATCCGAATGCACCGTGAAGTGCTACGAAT 2288 Query 102430 GCCCAGAGTCCCCCAAGTTG-GACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCA 102488 | ||| | ||| ||||| || ||| || || ||| || ||||| ||||| || ||||| Sbjct 2287 GTCCATAATCCACCAAGCTGACACCAACGTG-TGAACTCACCTTGTGCTTCTGGTCCCCA 2229 Query 102489 AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAA 102548 ||| |||||||| || ||| ||||| || || || ||||| || || | ||||||||| Sbjct 2228 AAGGAGAAGAAGTGAGTGAGCCATACTGTTAGATGGTGTTGATACTGCCGATGTAAGGAA 2169 Query 102549 ATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGT 102608 ||| || |||||||| | || | ||||| || ||||| ||||| | || || Sbjct 2168 GTTACATCCCTCAAGGTATGAACTTGCTAAACCGTGTGTGTACCATGAAGTTACGAATGT 2109 Query 102609 CGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCA-GTGGGAAAAAGAAGTAGTCCAG 102667 || ||||||| ||| || |||| ||| | || ||| |||||| || || | ||| | Sbjct 2108 TGTTCCAGTAAACCATCCACCAACTGCAAAGTATGCACATGGGAATAATAA-AATTCCTG 2050 Query 102668 ACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAACCA 102725 ||||||| || || || || ||||| || |||| |||||| || | | |||||||||| Sbjct 2049 ACCAACCTACGAATACGAAACGATCACGCTTAAGCCAGTCGTCTACGTTGTCAAACCA 1992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633513449540520