Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq19 735 0.0
>seq19
Length=72585
Score = 735 bits (814), Expect = 0.0
Identities = 749/984 (76%), Gaps = 2/984 (0%)
Strand=Plus/Minus
Query 103166 TCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATA 103225
||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 11166 TCTACAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 11107
Query 103226 CCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCA 103285
|| || ||| ||||| | | || ||||| ||||| | ||||| || | |||
Sbjct 11106 CCGAGGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCT 11047
Query 103286 AGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGT 103345
| | ||||||||||||||||||||||| |||||||| ||||| || || ||| |
Sbjct 11046 ACTACAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATA 10987
Query 103346 GCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAG 103405
|| ||||||||||| |||| |||||| | |||
Sbjct 10986 GCTGTGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAG 10927
Query 103406 TTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATG 103465
||||||||||| |||||||||||||| | ||| ||||||||||| || || |||||||||
Sbjct 10926 TTGTTGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATG 10867
Query 103466 TTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTC 103525
||||| |||||||| ||||||||||||||||| || |||| ||| || | |||||
Sbjct 10866 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTA 10807
Query 103526 GTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCA 103585
|||||||| | || || || || || || ||||||||||| ||| ||| |||||||||
Sbjct 10806 GTCTCACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCA 10747
Query 103586 CCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCT 103645
||||| || |||||||| || ||||||||||| |||||||| || ||||| || || ||
Sbjct 10746 CCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 10687
Query 103646 TGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAAC 103705
||||| || | |||| ||||||| ||||| |||||||| | |||||| |||| |||||
Sbjct 10686 TGGAATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAA 10627
Query 103706 GAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAG 103765
||||| ||||| | ||||| || | |||||| || | || || || ||||||||||||
Sbjct 10626 GAACCCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAG 10567
Query 103766 TATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCC 103825
|| || ||| ||||| || ||||| || | |||| | || | ||||||||||| |||
Sbjct 10566 TAAGCTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCC 10507
Query 103826 ATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTA 103885
|| |||| | | || || |||| |||||| |||| | ||| ||| |||||||||||||
Sbjct 10506 ATGTATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTG 10447
Query 103886 TACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCG 103945
|| ||||||||||||||||| ||||||||||| || || ||||||||||| || || |||
Sbjct 10446 TAAAGCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCG 10387
Query 103946 TTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCG 104005
|| || | || | || |||||||||||||||||||| |||||||| ||||| ||||
Sbjct 10386 TTAGATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGAT 10327
Query 104006 ACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA- 104064
|| || ||||| || || |||||||| || ||||| || || | || || ||||||||
Sbjct 10326 ACTGGCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAAT 10267
Query 104065 GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAG 104124
| || ||||| | | | ||| |||||||| | || ||||||||||| | || ||
Sbjct 10266 ACTGA-AGTTGCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAAAG 10208
Query 104125 ACGGTTGTTTGTCGATGTAACCCA 104148
|||||| | || || |||| |||
Sbjct 10207 ACGGTTCTCAGTTGAAGTAATCCA 10184
Score = 735 bits (814), Expect = 0.0
Identities = 749/984 (76%), Gaps = 2/984 (0%)
Strand=Plus/Plus
Query 103166 TCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATA 103225
||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 35977 TCTACAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 36036
Query 103226 CCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCA 103285
|| || ||| ||||| | | || ||||| ||||| | ||||| || | |||
Sbjct 36037 CCGAGGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCT 36096
Query 103286 AGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGT 103345
| | ||||||||||||||||||||||| |||||||| ||||| || || ||| |
Sbjct 36097 ACTACAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATA 36156
Query 103346 GCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAG 103405
|| ||||||||||| |||| |||||| | |||
Sbjct 36157 GCTGTGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAG 36216
Query 103406 TTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATG 103465
||||||||||| |||||||||||||| | ||| ||||||||||| || || |||||||||
Sbjct 36217 TTGTTGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATG 36276
Query 103466 TTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTC 103525
||||| |||||||| ||||||||||||||||| || |||| ||| || | |||||
Sbjct 36277 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTA 36336
Query 103526 GTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCA 103585
|||||||| | || || || || || || ||||||||||| ||| ||| |||||||||
Sbjct 36337 GTCTCACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCA 36396
Query 103586 CCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCT 103645
||||| || |||||||| || ||||||||||| |||||||| || ||||| || || ||
Sbjct 36397 CCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 36456
Query 103646 TGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAAC 103705
||||| || | |||| ||||||| ||||| |||||||| | |||||| |||| |||||
Sbjct 36457 TGGAATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAA 36516
Query 103706 GAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAG 103765
||||| ||||| | ||||| || | |||||| || | || || || ||||||||||||
Sbjct 36517 GAACCCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAG 36576
Query 103766 TATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCC 103825
|| || ||| ||||| || ||||| || | |||| | || | ||||||||||| |||
Sbjct 36577 TAAGCTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCC 36636
Query 103826 ATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTA 103885
|| |||| | | || || |||| |||||| |||| | ||| ||| |||||||||||||
Sbjct 36637 ATGTATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTG 36696
Query 103886 TACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCG 103945
|| ||||||||||||||||| ||||||||||| || || ||||||||||| || || |||
Sbjct 36697 TAAAGCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCG 36756
Query 103946 TTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCG 104005
|| || | || | || |||||||||||||||||||| |||||||| ||||| ||||
Sbjct 36757 TTAGATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGAT 36816
Query 104006 ACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA- 104064
|| || ||||| || || |||||||| || ||||| || || | || || ||||||||
Sbjct 36817 ACTGGCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAAT 36876
Query 104065 GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAG 104124
| || ||||| | | | ||| |||||||| | || ||||||||||| | || ||
Sbjct 36877 ACTGA-AGTTGCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAAAG 36935
Query 104125 ACGGTTGTTTGTCGATGTAACCCA 104148
|||||| | || || |||| |||
Sbjct 36936 ACGGTTCTCAGTTGAAGTAATCCA 36959
Score = 614 bits (680), Expect = 7e-171
Identities = 750/1018 (74%), Gaps = 4/1018 (0%)
Strand=Plus/Minus
Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769
|||||||| || | ||| | |||||| ||||| ||||||| ||||||||| || |||||
Sbjct 3007 AGAGCGTTTCCACGTGGAAGTACCTCCTCAGGGAATACAAGGTTTTCATGAGGCTGATCT 2948
Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829
| ||||| ||||||||| | |||||| || | || || ||||| |||||||| ||
Sbjct 2947 TGAGCTGCCATCCATGCACGAATACCTTCGTTAAGAAGAATATTCTTAGTGTAGAATGTT 2888
Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889
|| ||||| |||||||| ||||| | ||||||||| ||||| ||||| || ||||| |||
Sbjct 2887 TCAAACTCAGGATCTTCAGCTGCACGGATCTCTTGTGATACGAAGTCGTATGCACGGAGG 2828
Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949
|| || || | || | || ||| | | |||| | || | ||||| || ||
Sbjct 2827 TTAAGTGCTAATCCTACAACACCAAGTGCTGACATCCATAACCCTGTTACAGGTACGAAA 2768
Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009
||||||||||| || | ||| | ||| ||| || || | ||| || || || ||||||
Sbjct 2767 AGCATAAAGAAGTGAAGCCAACGCTTGTTAGAGAAAGCTACACCGAAAATCTGTGACCAG 2708
Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069
|||||||||||||| |||||||| ||||||||||| |||| || | | ||||| |
Sbjct 2707 AAACGGTTTGCTGTTACCATTGAGTAAGTCTCTTCAGCTTGAGTTGGGTTAAATGCACGG 2648
Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129
|||||||||| |||||||||||| | || |||||||| ||||| | ||||| ||
Sbjct 2647 AAAGTGTTTGAACCATCACCATCTTCGAAAAGTGTGTTCTCTACAGTTGCTCCGTGAATC 2588
Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189
|| | || |||||| |||| || | ||| || || |||||||| ||||||||||| ||
Sbjct 2587 GCACAAAGAAGTGCTGCTCCAAGTACACCAGCTACTCCCATCATGTGGAATGGGTTAAGT 2528
Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249
|||||||| ||||| || || | ||| || | ||| | || || | || ||||||||
Sbjct 2527 GTCCAGTTGTGGAACCCTTGGAAGAAAAGAATGAAACGGAAAATTCCCGCTACACCAAAT 2468
Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309
|| || ||||||||||| | || ||||| || || || || || || ||| |||||
Sbjct 2467 GAAGGTGCAAAGAACCATCCTGATTGTCCAAGTGGGTAAATAAGGAATACAGATACAAAT 2408
Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369
||||||||||| | ||||| ||||| || ||||||||||||||| | | | ||
Sbjct 2407 ACAGCGATAGGTGCTGAGAATGCAATCGCGTTGTACGGACGAATTTGTACTGCACGTGCA 2348
Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429
| || |||||||| ||||| || || || | | ||||||||||| || || || ||
Sbjct 2347 ATTTCAAATTGACGGAGCATAAATCCGATTAATCCGAATGCACCGTGAAGTGCTACGAAT 2288
Query 102430 GCCCAGAGTCCCCCAAGTTG-GACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCA 102488
| ||| | ||| ||||| || ||| || || ||| || ||||| ||||| || |||||
Sbjct 2287 GTCCATAATCCACCAAGCTGACACCAACGTG-TGAACTCACCTTGTGCTTCTGGTCCCCA 2229
Query 102489 AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAA 102548
||| |||||||| || ||| ||||| || || || ||||| || || | |||||||||
Sbjct 2228 AAGGAGAAGAAGTGAGTGAGCCATACTGTTAGATGGTGTTGATACTGCCGATGTAAGGAA 2169
Query 102549 ATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGT 102608
||| || |||||||| | || | ||||| || ||||| ||||| | || ||
Sbjct 2168 GTTACATCCCTCAAGGTATGAACTTGCTAAACCGTGTGTGTACCATGAAGTTACGAATGT 2109
Query 102609 CGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCA-GTGGGAAAAAGAAGTAGTCCAG 102667
|| ||||||| ||| || |||| ||| | || ||| |||||| || || | ||| |
Sbjct 2108 TGTTCCAGTAAACCATCCACCAACTGCAAAGTATGCACATGGGAATAATAA-AATTCCTG 2050
Query 102668 ACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAACCA 102725
||||||| || || || || ||||| || |||| |||||| || | | ||||||||||
Sbjct 2049 ACCAACCTACGAATACGAAACGATCACGCTTAAGCCAGTCGTCTACGTTGTCAAACCA 1992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633513449540520
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