Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq19 605 8e-169
>seq19
Length=72585
Score = 605 bits (670), Expect = 8e-169
Identities = 733/995 (74%), Gaps = 6/995 (1%)
Strand=Plus/Minus
Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521
|| || |||||||||||||| ||||||||||| ||||| ||||| ||||| || || |
Sbjct 11166 TCTACAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 11107
Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581
|| ||||| |||||||| | || |||||||| ||||| || || |||| | | | ||
Sbjct 11106 CCGAGGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCT 11047
Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641
| | ||| ||||| |||||||| || || | |||||||||||| || || | || |
Sbjct 11046 ACTACAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATA 10987
Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701
|| | ||||| || || | || |||||| || || ||||| || || ||| ||
Sbjct 10986 GCTGTGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAG 10927
Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761
|| || || ||| |||||||||||||| || || || || ||||| ||||| || ||
Sbjct 10926 TTGTTGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATG 10867
Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821
|||||||||||||| ||||| || |||||||| || ||| || | | |||||
Sbjct 10866 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTA 10807
Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881
|||||||| ||||| || || || || || ||||||||| |||||||| | |||
Sbjct 10806 GTCTCACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCA 10747
Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941
|| ||||| || || ||||| |||||||| || || |||||||| || ||||||||||||
Sbjct 10746 CCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 10687
Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001
||||| || | |||| ||||||| || || || || || | ||||| ||||||| |||
Sbjct 10686 TGGAATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAA 10627
Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061
|| ||||| || | || || || | ||| ||||| || || || || ||||||||||||
Sbjct 10626 GAACCCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAG 10567
Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121
|| || ||| ||||| || | ||| |||| || | ||| |||||||| || |||
Sbjct 10566 TAAGCTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCC 10507
Query 22122 ATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTG 22181
||||| | | | | || |||| |||||| ||||| | || ||| | ||||| ||||||
Sbjct 10506 ATGTATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTG 10447
Query 22182 TACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCA 22241
|| ||||| |||||||| | ||| |||||||| |||||||||||||| |||||||| ||
Sbjct 10446 TAAAGCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCG 10387
Query 22242 TTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCG 22301
||| | || | || || || || ||||||||||| || |||| || || ||||
Sbjct 10386 TTAGATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGAT 10327
Query 22302 ACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAAT-AAA 22360
|| || || ||||| |||||||| || ||||| || || ||| ||| || | || ||
Sbjct 10326 ACTGGCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAAT 10267
Query 22361 AC--AAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418
|| ||||| || | ||| | || ||||| | ||||||||||| || | |||
Sbjct 10266 ACTGAAGTT---GCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAA 10210
Query 22419 AGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453
|||||||| | ||| || || | ||| ||||||||
Sbjct 10209 AGACGGTTCTCAGTTGAAGTAATCCATGAACAAAA 10175
Score = 605 bits (670), Expect = 8e-169
Identities = 733/995 (74%), Gaps = 6/995 (1%)
Strand=Plus/Plus
Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521
|| || |||||||||||||| ||||||||||| ||||| ||||| ||||| || || |
Sbjct 35977 TCTACAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 36036
Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581
|| ||||| |||||||| | || |||||||| ||||| || || |||| | | | ||
Sbjct 36037 CCGAGGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCT 36096
Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641
| | ||| ||||| |||||||| || || | |||||||||||| || || | || |
Sbjct 36097 ACTACAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATA 36156
Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701
|| | ||||| || || | || |||||| || || ||||| || || ||| ||
Sbjct 36157 GCTGTGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAG 36216
Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761
|| || || ||| |||||||||||||| || || || || ||||| ||||| || ||
Sbjct 36217 TTGTTGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATG 36276
Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821
|||||||||||||| ||||| || |||||||| || ||| || | | |||||
Sbjct 36277 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTA 36336
Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881
|||||||| ||||| || || || || || ||||||||| |||||||| | |||
Sbjct 36337 GTCTCACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCA 36396
Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941
|| ||||| || || ||||| |||||||| || || |||||||| || ||||||||||||
Sbjct 36397 CCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 36456
Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001
||||| || | |||| ||||||| || || || || || | ||||| ||||||| |||
Sbjct 36457 TGGAATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAA 36516
Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061
|| ||||| || | || || || | ||| ||||| || || || || ||||||||||||
Sbjct 36517 GAACCCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAG 36576
Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121
|| || ||| ||||| || | ||| |||| || | ||| |||||||| || |||
Sbjct 36577 TAAGCTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCC 36636
Query 22122 ATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTG 22181
||||| | | | | || |||| |||||| ||||| | || ||| | ||||| ||||||
Sbjct 36637 ATGTATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTG 36696
Query 22182 TACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCA 22241
|| ||||| |||||||| | ||| |||||||| |||||||||||||| |||||||| ||
Sbjct 36697 TAAAGCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCG 36756
Query 22242 TTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCG 22301
||| | || | || || || || ||||||||||| || |||| || || ||||
Sbjct 36757 TTAGATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGAT 36816
Query 22302 ACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAAT-AAA 22360
|| || || ||||| |||||||| || ||||| || || ||| ||| || | || ||
Sbjct 36817 ACTGGCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAAT 36876
Query 22361 AC--AAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418
|| ||||| || | ||| | || ||||| | ||||||||||| || | |||
Sbjct 36877 ACTGAAGTT---GCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAA 36933
Query 22419 AGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453
|||||||| | ||| || || | ||| ||||||||
Sbjct 36934 AGACGGTTCTCAGTTGAAGTAATCCATGAACAAAA 36968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146207967011820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |