Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 183 4e-41 seq6 161 1e-34 seq7 118 1e-21 >seq1 Length=2053059 Score = 183 bits (202), Expect = 4e-41 Identities = 617/947 (65%), Gaps = 18/947 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACG 75186 || |||| ||| | | |||||| || ||| || || ||| || | || || | || Sbjct 2014211 CGCGACTTTGACTACGATTACTTCGGCTACAAGACTCTGGAGC-GATCGTACCTCCTCCG 2014269 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 |||| |||| || |||| ||| ||| || || ||||||| ||||| |||||||| Sbjct 2014270 CGTCGACGGCAAGATCGTGGAGCGCCCCCAGCACCTGCTCATGCGCGTCGCCATCGGCAT 2014329 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 |||| ||| | | || | | | || || ||| ||| | | ||| | | | | Sbjct 2014330 CCACAAGGATG---TGGAGAAGGCCATCGACACCTACCACATGCTCTCCGAGCGCTGGAT 2014386 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTG 75366 | ||||| | || || |||||||| | ||||| || | || ||| |||| || Sbjct 2014387 GACCCACGCGTCCCCCACGCTCTTCAACTCGGGTACCCCCCGCCCCCAGCTGTCGTCGTG 2014446 Query 75367 CTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTG 75426 ||||| ||||||| |||||||| || ||| | || ||||| | || || | |||||| Sbjct 2014447 TTTCCTCATCGCCATGAAGGAGGATTCCATCGAGGGCATCTACGATACCCTCAAGGAGTG 2014506 Query 75427 TGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAA 75486 ||| ||||| |||| || || || || || || |||||| || | | |||| Sbjct 2014507 CGCGTGCATCTCCAAGTCCGCCGGCGGCATCGGTCTGTCCATCCACGACATCCGCGCCAC 2014566 Query 75487 TAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGT 75546 || || || || || || || || | || || || || ||||||||||| Sbjct 2014567 CTCTTCCTACATCCGCGGCACCAACGGAACCTCCAACGGCATCATCCCCATGCTTCGCGT 2014626 Query 75547 ATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAGG---GGTCCAT-CG 75602 ||||||| ||| ||| | || || | || | | |||| | ||| || ||| || Sbjct 2014627 CTTTAACGACACCGCGAGGTACGTCGACCAGG-GCGGCGGCAAGAGGAAAGGCGCATTCG 2014685 Query 75603 CGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACC 75662 | ||||| | || || ||||| || || ||| | || | || || | || |||| Sbjct 2014686 CCATCTACCTCGAGCCGTGGCACGCGGACATCTTCGACTGGCTCGACCTCCGCAAGAACC 2014745 Query 75663 AAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCA--GACCT 75720 | || | || ||||| || || || || || | |||||||| ||| || || Sbjct 2014746 ACGGCAAGGAGGAGGCGCGTGCCAGGGACCTGTTCTACGGCCTGTGGA--CCAACGATCT 2014803 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 ||||||||||| || |||| || | ||| | || ||||| || || | || || Sbjct 2014804 GTTCATGAAGCGCGTCGAGGCTAACGGCGAGTGGACCCTCTTCTGCCCCAACGAAGCCCC 2014863 Query 75781 AGGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839 |||||| | || || | ||| |||||||| || || || ||| |||||| || | || Sbjct 2014864 GGGTCTCGCGGATTGCTG-GGGCGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGGCGG 2014922 Query 75840 AGGGTAGAGCCAATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCA 75898 |||| | | || ||| || | || | | | | | ||| || || ||| | || Sbjct 2014923 AGGGCAAGGGTAAGAAGACGGT-CAAGGCCCAGCAGCTCTGGTTCGCCATCCTCGAGTCC 2014981 Query 75899 CAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAAC 75958 ||| |||||||| | || || ||||| | ||||||||| || ||| ||| ||| Sbjct 2014982 CAGGTTGAGACTGGTAACCCGTACATGCTCTTCAAGGATGCGTGCAACCGCAAGTCCAAC 2015041 Query 75959 CAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018 || |||| | || || ||| ||| || || ||||| || ||| | |||||||| Sbjct 2015042 CAGCAGAACCTCGGCACCATCCGATCCTCCAACCTCTGCACCGAGATTGTCGAGTACACC 2015101 Query 76019 GATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCC 76065 ||| ||||| || || ||||| | || || ||||| || || Sbjct 2015102 TCGCCGGAGGAGACCGCGGTGTGCAACCTCGCGTCCATCGCGCTGCC 2015148 >seq6 Length=1431126 Score = 161 bits (178), Expect = 1e-34 Identities = 310/450 (69%), Gaps = 8/450 (2%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 |||||||||||||| | ||||| ||||| | ||||| |||||||||||||| || ||| Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||| | || || ||| |||||||||| || |||||||| ||||| |||||| || || Sbjct 1273447 TGCTCCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAG 1273388 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG 65250 || || ||| || ||||| || |||| || |||| |||| ||| || | | | Sbjct 1273387 CTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTG-CGTG--CCTCCTCTACTCGTAC 1273331 Query 65251 CGTAA-TAGACCCACTACCGAAACTATC--CACGC-CATCGTGAAAGAGGCGGTTGAGAT 65306 || ||| | | | ||| | || || || ||||| || ||||| || ||||| Sbjct 1273330 ATCAACAAGAAGC-CCAACGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAGAT 1273272 Query 65307 TGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAA 65366 ||||| | ||| ||| ||||| ||||| || ||| |||| |||||| | || Sbjct 1273271 CGAGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCGGATCT 1273212 Query 65367 GATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACC 65426 |||||||||||||| |||| || | |||| |||||| || | || || | Sbjct 1273211 CATGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGCATGTCGAA 1273152 Query 65427 CATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGAC 65486 | ||||| || || || |||| ||||| ||| ||| | || ||||| Sbjct 1273151 GGAGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAAGAC 1273092 Query 65487 CAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||| |||||||| || || || || Sbjct 1273091 CAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1273062 Score = 143 bits (158), Expect = 3e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 24286 GGTCCGAGAACCACCTCCGGTGTGAGATACTTCTTTAGAACATTCGGTGGATGGAGCATA 24345 |||||||| | |||| || | ||| || ||||| || ||||| || || |||||||| Sbjct 499122 GGTCCGAGGCACGCCTCGGGCGGGAGGTATTTCTTGAGCACATTGGGAGGGTGGAGCATG 499181 Query 24346 TCAAACTCTTCCGTCGCATCCTTTCCAGCGAAAAGTATGATCGCCTTCTTGCCACCTGGA 24405 || ||||| ||||| || ||||| || ||||| || ||||| |||||||||||||| || Sbjct 499182 TCGAACTCCTCCGTTGCGTCCTTACCCGCGAAGAGCATGATAGCCTTCTTGCCACCCGGG 499241 Query 24406 TGATCTGGCAAAAACTTTGTGAGATCATACACGATATCTTTGATAATTACCCAACAATCT 24465 || || ||||||||||| || | || || || | | ||||||| ||||| || || Sbjct 499242 TGGTCCGGCAAAAACTTGGTCACGTCGTAAACCTTGCCGCTGATAATCACCCAGCAGTCG 499301 Query 24466 TCTTCGGTATTATGCTTCGCAA 24487 | ||||| || ||||| |||| Sbjct 499302 CCCTCGGTGTTGTGCTTGGCAA 499323 >seq7 Length=1394110 Score = 118 bits (130), Expect = 1e-21 Identities = 230/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||||||||| || | ||||| ||||| |||||||| |||||||||||||| || || Sbjct 900289 TTCGCCGAGCGACTGGTGGCGTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGGATCGTTT 900348 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| || | ||| | |||||||| || ||||||| || || |||||| || || Sbjct 900349 TGCGCAATCTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAG 900408 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG 65250 || || ||| | || ||||| |||||| || || ||| || ||| || | | || Sbjct 900409 CTCATCTCCAGGGACGAGGGCCTCCACTGCGACTTCGCC-TG--CCTCCTCTACTCCATG 900465 Query 65251 CGTAATAGACCCAC----TACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGAT 65306 | | | |||| | | ||| | || | ||||| || || ||||| || || Sbjct 900466 C-TCAAGCACCCTCTCGATCCCGCGCGGCTGCAGGAGATCGTCAAGGATGCGGTGGACAT 900524 Query 65307 TGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAA 65366 ||||| | ||| | | || || || | || ||| | || |||||| | || Sbjct 900525 CGAGAAGGAGTTTGTGTGCGATGCTCTGTCGTGCGCGCTCGTGGGCATGAACGCGGATCT 900584 Query 65367 GATGTCCGAGTACATTGAGTATGTGTCGGATCGTCT 65402 |||||||||||||| |||| ||| |||| || || Sbjct 900585 CATGTCCGAGTACATCGAGTTTGTCGCGGACCGCCT 900620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569458314720