Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1 183 4e-41
seq6 161 1e-34
seq7 118 1e-21
>seq1
Length=2053059
Score = 183 bits (202), Expect = 4e-41
Identities = 617/947 (65%), Gaps = 18/947 (2%)
Strand=Plus/Plus
Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACG 75186
|| |||| ||| | | |||||| || ||| || || ||| || | || || | ||
Sbjct 2014211 CGCGACTTTGACTACGATTACTTCGGCTACAAGACTCTGGAGC-GATCGTACCTCCTCCG 2014269
Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246
|||| |||| || |||| ||| ||| || || ||||||| ||||| ||||||||
Sbjct 2014270 CGTCGACGGCAAGATCGTGGAGCGCCCCCAGCACCTGCTCATGCGCGTCGCCATCGGCAT 2014329
Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306
|||| ||| | | || | | | || || ||| ||| | | ||| | | | |
Sbjct 2014330 CCACAAGGATG---TGGAGAAGGCCATCGACACCTACCACATGCTCTCCGAGCGCTGGAT 2014386
Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTG 75366
| ||||| | || || |||||||| | ||||| || | || ||| |||| ||
Sbjct 2014387 GACCCACGCGTCCCCCACGCTCTTCAACTCGGGTACCCCCCGCCCCCAGCTGTCGTCGTG 2014446
Query 75367 CTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTG 75426
||||| ||||||| |||||||| || ||| | || ||||| | || || | ||||||
Sbjct 2014447 TTTCCTCATCGCCATGAAGGAGGATTCCATCGAGGGCATCTACGATACCCTCAAGGAGTG 2014506
Query 75427 TGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAA 75486
||| ||||| |||| || || || || || || |||||| || | | ||||
Sbjct 2014507 CGCGTGCATCTCCAAGTCCGCCGGCGGCATCGGTCTGTCCATCCACGACATCCGCGCCAC 2014566
Query 75487 TAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGT 75546
|| || || || || || || || | || || || || |||||||||||
Sbjct 2014567 CTCTTCCTACATCCGCGGCACCAACGGAACCTCCAACGGCATCATCCCCATGCTTCGCGT 2014626
Query 75547 ATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAGG---GGTCCAT-CG 75602
||||||| ||| ||| | || || | || | | |||| | ||| || ||| ||
Sbjct 2014627 CTTTAACGACACCGCGAGGTACGTCGACCAGG-GCGGCGGCAAGAGGAAAGGCGCATTCG 2014685
Query 75603 CGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACC 75662
| ||||| | || || ||||| || || ||| | || | || || | || ||||
Sbjct 2014686 CCATCTACCTCGAGCCGTGGCACGCGGACATCTTCGACTGGCTCGACCTCCGCAAGAACC 2014745
Query 75663 AAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCA--GACCT 75720
| || | || ||||| || || || || || | |||||||| ||| || ||
Sbjct 2014746 ACGGCAAGGAGGAGGCGCGTGCCAGGGACCTGTTCTACGGCCTGTGGA--CCAACGATCT 2014803
Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780
||||||||||| || |||| || | ||| | || ||||| || || | || ||
Sbjct 2014804 GTTCATGAAGCGCGTCGAGGCTAACGGCGAGTGGACCCTCTTCTGCCCCAACGAAGCCCC 2014863
Query 75781 AGGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839
|||||| | || || | ||| |||||||| || || || ||| |||||| || | ||
Sbjct 2014864 GGGTCTCGCGGATTGCTG-GGGCGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGGCGG 2014922
Query 75840 AGGGTAGAGCCAATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCA 75898
|||| | | || ||| || | || | | | | | ||| || || ||| | ||
Sbjct 2014923 AGGGCAAGGGTAAGAAGACGGT-CAAGGCCCAGCAGCTCTGGTTCGCCATCCTCGAGTCC 2014981
Query 75899 CAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAAC 75958
||| |||||||| | || || ||||| | ||||||||| || ||| ||| |||
Sbjct 2014982 CAGGTTGAGACTGGTAACCCGTACATGCTCTTCAAGGATGCGTGCAACCGCAAGTCCAAC 2015041
Query 75959 CAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018
|| |||| | || || ||| ||| || || ||||| || ||| | ||||||||
Sbjct 2015042 CAGCAGAACCTCGGCACCATCCGATCCTCCAACCTCTGCACCGAGATTGTCGAGTACACC 2015101
Query 76019 GATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCC 76065
||| ||||| || || ||||| | || || ||||| || ||
Sbjct 2015102 TCGCCGGAGGAGACCGCGGTGTGCAACCTCGCGTCCATCGCGCTGCC 2015148
>seq6
Length=1431126
Score = 161 bits (178), Expect = 1e-34
Identities = 310/450 (69%), Gaps = 8/450 (2%)
Strand=Plus/Minus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
|||||||||||||| | ||||| ||||| | ||||| |||||||||||||| || |||
Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448
Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190
||| | || || ||| |||||||||| || |||||||| ||||| |||||| || ||
Sbjct 1273447 TGCTCCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAG 1273388
Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG 65250
|| || ||| || ||||| || |||| || |||| |||| ||| || | | |
Sbjct 1273387 CTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTG-CGTG--CCTCCTCTACTCGTAC 1273331
Query 65251 CGTAA-TAGACCCACTACCGAAACTATC--CACGC-CATCGTGAAAGAGGCGGTTGAGAT 65306
|| ||| | | | ||| | || || || ||||| || ||||| || |||||
Sbjct 1273330 ATCAACAAGAAGC-CCAACGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAGAT 1273272
Query 65307 TGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAA 65366
||||| | ||| ||| ||||| ||||| || ||| |||| |||||| | ||
Sbjct 1273271 CGAGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCGGATCT 1273212
Query 65367 GATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACC 65426
|||||||||||||| |||| || | |||| |||||| || | || || |
Sbjct 1273211 CATGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGCATGTCGAA 1273152
Query 65427 CATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGAC 65486
| ||||| || || || |||| ||||| ||| ||| | || |||||
Sbjct 1273151 GGAGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAAGAC 1273092
Query 65487 CAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516
||||||||| |||||||| || || || ||
Sbjct 1273091 CAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1273062
Score = 143 bits (158), Expect = 3e-29
Identities = 153/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 24286 GGTCCGAGAACCACCTCCGGTGTGAGATACTTCTTTAGAACATTCGGTGGATGGAGCATA 24345
|||||||| | |||| || | ||| || ||||| || ||||| || || ||||||||
Sbjct 499122 GGTCCGAGGCACGCCTCGGGCGGGAGGTATTTCTTGAGCACATTGGGAGGGTGGAGCATG 499181
Query 24346 TCAAACTCTTCCGTCGCATCCTTTCCAGCGAAAAGTATGATCGCCTTCTTGCCACCTGGA 24405
|| ||||| ||||| || ||||| || ||||| || ||||| |||||||||||||| ||
Sbjct 499182 TCGAACTCCTCCGTTGCGTCCTTACCCGCGAAGAGCATGATAGCCTTCTTGCCACCCGGG 499241
Query 24406 TGATCTGGCAAAAACTTTGTGAGATCATACACGATATCTTTGATAATTACCCAACAATCT 24465
|| || ||||||||||| || | || || || | | ||||||| ||||| || ||
Sbjct 499242 TGGTCCGGCAAAAACTTGGTCACGTCGTAAACCTTGCCGCTGATAATCACCCAGCAGTCG 499301
Query 24466 TCTTCGGTATTATGCTTCGCAA 24487
| ||||| || ||||| ||||
Sbjct 499302 CCCTCGGTGTTGTGCTTGGCAA 499323
>seq7
Length=1394110
Score = 118 bits (130), Expect = 1e-21
Identities = 230/336 (68%), Gaps = 8/336 (2%)
Strand=Plus/Plus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
||||||||||| || | ||||| ||||| |||||||| |||||||||||||| || ||
Sbjct 900289 TTCGCCGAGCGACTGGTGGCGTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGGATCGTTT 900348
Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190
||||| || | ||| | |||||||| || ||||||| || || |||||| || ||
Sbjct 900349 TGCGCAATCTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAG 900408
Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG 65250
|| || ||| | || ||||| |||||| || || ||| || ||| || | | ||
Sbjct 900409 CTCATCTCCAGGGACGAGGGCCTCCACTGCGACTTCGCC-TG--CCTCCTCTACTCCATG 900465
Query 65251 CGTAATAGACCCAC----TACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGAT 65306
| | | |||| | | ||| | || | ||||| || || ||||| || ||
Sbjct 900466 C-TCAAGCACCCTCTCGATCCCGCGCGGCTGCAGGAGATCGTCAAGGATGCGGTGGACAT 900524
Query 65307 TGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAA 65366
||||| | ||| | | || || || | || ||| | || |||||| | ||
Sbjct 900525 CGAGAAGGAGTTTGTGTGCGATGCTCTGTCGTGCGCGCTCGTGGGCATGAACGCGGATCT 900584
Query 65367 GATGTCCGAGTACATTGAGTATGTGTCGGATCGTCT 65402
|||||||||||||| |||| ||| |||| || ||
Sbjct 900585 CATGTCCGAGTACATCGAGTTTGTCGCGGACCGCCT 900620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596569458314720
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