Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq19 536 4e-148 >seq19 Length=72585 Score = 536 bits (594), Expect = 4e-148 Identities = 716/989 (72%), Gaps = 6/989 (1%) Strand=Plus/Minus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 ||||| | ||||||||| ||||| ||||| |||||||||||||| ||||| | |||||| Sbjct 11160 GATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGAGG 11101 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 ||||| ||||||| | |||||||||||| |||| ||| || ||||||||| Sbjct 11100 TTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTACA 11041 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 |||||||| ||||| || || || ||||| || ||||| || | |||||||||| ||| Sbjct 11040 GACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTGTG 10981 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || || | || ||||| | || || ||||| || || ||||| ||| || Sbjct 10980 AACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGTTG 10921 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 || || || || || || | | || ||||| ||||||||||| || || || || Sbjct 10920 AATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGTAA 10861 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACT--TCCTCTGTCGTTT 26231 |||||||| ||||| || ||||| || || | | || ||||| | ||| || || | Sbjct 10860 GTCTCTTCTTCTTGTCCGAACTTGTATCC-TGCGTTTG-CAGACTCGTTCTCAGTAGTCT 10803 Query 26232 CTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGA 26291 | || || || ||||| || | |||||||| |||| |||||| | ||||||| Sbjct 10802 CACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGA 10743 Query 26292 AAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGA 26351 | || |||||||||||| ||| |||||||||||||| || || || || || || |||| Sbjct 10742 ATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 10683 Query 26352 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCC 26411 |||||| ||| ||||| ||||| ||||| ||||||||||||||||||||| ||| | Sbjct 10682 ATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAAC 10623 Query 26412 CTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATG 26471 | || |||| || || || | ||| || || ||||| | || || || | || | Sbjct 10622 CCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAG 10563 Query 26472 CAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCAT 26531 | ||| ||||| || | |||||||| | | |||| || ||||||| | || | Sbjct 10562 CTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGT 10503 Query 26532 ATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATA 26591 ||| | ||| || |||||||| | | || || || || || || || ||||| | Sbjct 10502 ATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAA 10443 Query 26592 GCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAG 26651 ||||||| || || | | ||||||||||| ||||| || || |||||||| ||||||| Sbjct 10442 GCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAG 10383 Query 26652 AGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTG 26711 | | |||| || || || || || || |||||||||||||| | || || || |||| Sbjct 10382 ATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTG 10323 Query 26712 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATG 26771 ||||||| || ||||| ||||||||||| || || || || || || | || || || Sbjct 10322 GCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTG 10263 Query 26772 TAGTGGCTGCGAGT-AAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGG 26830 ||| |||| ||| ||| |||| ||||| | || |||||||| || | || |||||| Sbjct 10262 AAGTTGCTGTAAGTAAAGTAGGG-ATCATTAATACTCCGAACCAACCGATGTAAAGACGG 10204 Query 26831 TTCTCAGTACTTGTAACCCACTCACAAAA 26859 |||||||| |||| ||| |||||| Sbjct 10203 TTCTCAGTTGAAGTAATCCATGAACAAAA 10175 Score = 536 bits (594), Expect = 4e-148 Identities = 716/989 (72%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 ||||| | ||||||||| ||||| ||||| |||||||||||||| ||||| | |||||| Sbjct 35983 GATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGAGG 36042 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 ||||| ||||||| | |||||||||||| |||| ||| || ||||||||| Sbjct 36043 TTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTACA 36102 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 |||||||| ||||| || || || ||||| || ||||| || | |||||||||| ||| Sbjct 36103 GACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTGTG 36162 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || || | || ||||| | || || ||||| || || ||||| ||| || Sbjct 36163 AACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGTTG 36222 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 || || || || || || | | || ||||| ||||||||||| || || || || Sbjct 36223 AATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGTAA 36282 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACT--TCCTCTGTCGTTT 26231 |||||||| ||||| || ||||| || || | | || ||||| | ||| || || | Sbjct 36283 GTCTCTTCTTCTTGTCCGAACTTGTATCC-TGCGTTTG-CAGACTCGTTCTCAGTAGTCT 36340 Query 26232 CTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGA 26291 | || || || ||||| || | |||||||| |||| |||||| | ||||||| Sbjct 36341 CACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGA 36400 Query 26292 AAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGA 26351 | || |||||||||||| ||| |||||||||||||| || || || || || || |||| Sbjct 36401 ATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 36460 Query 26352 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCC 26411 |||||| ||| ||||| ||||| ||||| ||||||||||||||||||||| ||| | Sbjct 36461 ATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAAC 36520 Query 26412 CTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATG 26471 | || |||| || || || | ||| || || ||||| | || || || | || | Sbjct 36521 CCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAG 36580 Query 26472 CAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCAT 26531 | ||| ||||| || | |||||||| | | |||| || ||||||| | || | Sbjct 36581 CTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGT 36640 Query 26532 ATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATA 26591 ||| | ||| || |||||||| | | || || || || || || || ||||| | Sbjct 36641 ATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAA 36700 Query 26592 GCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAG 26651 ||||||| || || | | ||||||||||| ||||| || || |||||||| ||||||| Sbjct 36701 GCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAG 36760 Query 26652 AGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTG 26711 | | |||| || || || || || || |||||||||||||| | || || || |||| Sbjct 36761 ATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTG 36820 Query 26712 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATG 26771 ||||||| || ||||| ||||||||||| || || || || || || | || || || Sbjct 36821 GCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTG 36880 Query 26772 TAGTGGCTGCGAGT-AAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGG 26830 ||| |||| ||| ||| |||| ||||| | || |||||||| || | || |||||| Sbjct 36881 AAGTTGCTGTAAGTAAAGTAGGG-ATCATTAATACTCCGAACCAACCGATGTAAAGACGG 36939 Query 26831 TTCTCAGTACTTGTAACCCACTCACAAAA 26859 |||||||| |||| ||| |||||| Sbjct 36940 TTCTCAGTTGAAGTAATCCATGAACAAAA 36968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147711966672480