Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq19 536 4e-148
>seq19
Length=72585
Score = 536 bits (594), Expect = 4e-148
Identities = 716/989 (72%), Gaps = 6/989 (1%)
Strand=Plus/Minus
Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933
||||| | ||||||||| ||||| ||||| |||||||||||||| ||||| | ||||||
Sbjct 11160 GATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGAGG 11101
Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993
||||| ||||||| | |||||||||||| |||| ||| || |||||||||
Sbjct 11100 TTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTACA 11041
Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053
|||||||| ||||| || || || ||||| || ||||| || | |||||||||| |||
Sbjct 11040 GACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTGTG 10981
Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113
| ||| || || | || ||||| | || || ||||| || || ||||| ||| ||
Sbjct 10980 AACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGTTG 10921
Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173
|| || || || || || | | || ||||| ||||||||||| || || || ||
Sbjct 10920 AATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGTAA 10861
Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACT--TCCTCTGTCGTTT 26231
|||||||| ||||| || ||||| || || | | || ||||| | ||| || || |
Sbjct 10860 GTCTCTTCTTCTTGTCCGAACTTGTATCC-TGCGTTTG-CAGACTCGTTCTCAGTAGTCT 10803
Query 26232 CTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGA 26291
| || || || ||||| || | |||||||| |||| |||||| | |||||||
Sbjct 10802 CACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGA 10743
Query 26292 AAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGA 26351
| || |||||||||||| ||| |||||||||||||| || || || || || || ||||
Sbjct 10742 ATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 10683
Query 26352 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCC 26411
|||||| ||| ||||| ||||| ||||| ||||||||||||||||||||| ||| |
Sbjct 10682 ATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAAC 10623
Query 26412 CTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATG 26471
| || |||| || || || | ||| || || ||||| | || || || | || |
Sbjct 10622 CCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAG 10563
Query 26472 CAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCAT 26531
| ||| ||||| || | |||||||| | | |||| || ||||||| | || |
Sbjct 10562 CTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGT 10503
Query 26532 ATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATA 26591
||| | ||| || |||||||| | | || || || || || || || ||||| |
Sbjct 10502 ATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAA 10443
Query 26592 GCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAG 26651
||||||| || || | | ||||||||||| ||||| || || |||||||| |||||||
Sbjct 10442 GCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAG 10383
Query 26652 AGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTG 26711
| | |||| || || || || || || |||||||||||||| | || || || ||||
Sbjct 10382 ATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTG 10323
Query 26712 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATG 26771
||||||| || ||||| ||||||||||| || || || || || || | || || ||
Sbjct 10322 GCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTG 10263
Query 26772 TAGTGGCTGCGAGT-AAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGG 26830
||| |||| ||| ||| |||| ||||| | || |||||||| || | || ||||||
Sbjct 10262 AAGTTGCTGTAAGTAAAGTAGGG-ATCATTAATACTCCGAACCAACCGATGTAAAGACGG 10204
Query 26831 TTCTCAGTACTTGTAACCCACTCACAAAA 26859
|||||||| |||| ||| ||||||
Sbjct 10203 TTCTCAGTTGAAGTAATCCATGAACAAAA 10175
Score = 536 bits (594), Expect = 4e-148
Identities = 716/989 (72%), Gaps = 6/989 (1%)
Strand=Plus/Plus
Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933
||||| | ||||||||| ||||| ||||| |||||||||||||| ||||| | ||||||
Sbjct 35983 GATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGAGG 36042
Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993
||||| ||||||| | |||||||||||| |||| ||| || |||||||||
Sbjct 36043 TTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTACA 36102
Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053
|||||||| ||||| || || || ||||| || ||||| || | |||||||||| |||
Sbjct 36103 GACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTGTG 36162
Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113
| ||| || || | || ||||| | || || ||||| || || ||||| ||| ||
Sbjct 36163 AACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGTTG 36222
Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173
|| || || || || || | | || ||||| ||||||||||| || || || ||
Sbjct 36223 AATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGTAA 36282
Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACT--TCCTCTGTCGTTT 26231
|||||||| ||||| || ||||| || || | | || ||||| | ||| || || |
Sbjct 36283 GTCTCTTCTTCTTGTCCGAACTTGTATCC-TGCGTTTG-CAGACTCGTTCTCAGTAGTCT 36340
Query 26232 CTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGA 26291
| || || || ||||| || | |||||||| |||| |||||| | |||||||
Sbjct 36341 CACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGA 36400
Query 26292 AAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGA 26351
| || |||||||||||| ||| |||||||||||||| || || || || || || ||||
Sbjct 36401 ATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 36460
Query 26352 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCC 26411
|||||| ||| ||||| ||||| ||||| ||||||||||||||||||||| ||| |
Sbjct 36461 ATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAAC 36520
Query 26412 CTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATG 26471
| || |||| || || || | ||| || || ||||| | || || || | || |
Sbjct 36521 CCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAG 36580
Query 26472 CAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCAT 26531
| ||| ||||| || | |||||||| | | |||| || ||||||| | || |
Sbjct 36581 CTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGT 36640
Query 26532 ATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATA 26591
||| | ||| || |||||||| | | || || || || || || || ||||| |
Sbjct 36641 ATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAA 36700
Query 26592 GCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAG 26651
||||||| || || | | ||||||||||| ||||| || || |||||||| |||||||
Sbjct 36701 GCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAG 36760
Query 26652 AGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTG 26711
| | |||| || || || || || || |||||||||||||| | || || || ||||
Sbjct 36761 ATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTG 36820
Query 26712 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATG 26771
||||||| || ||||| ||||||||||| || || || || || || | || || ||
Sbjct 36821 GCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTG 36880
Query 26772 TAGTGGCTGCGAGT-AAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGG 26830
||| |||| ||| ||| |||| ||||| | || |||||||| || | || ||||||
Sbjct 36881 AAGTTGCTGTAAGTAAAGTAGGG-ATCATTAATACTCCGAACCAACCGATGTAAAGACGG 36939
Query 26831 TTCTCAGTACTTGTAACCCACTCACAAAA 26859
|||||||| |||| ||| ||||||
Sbjct 36940 TTCTCAGTTGAAGTAATCCATGAACAAAA 36968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147711966672480
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