Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq19 614 2e-171 >seq19 Length=72585 Score = 614 bits (680), Expect = 2e-171 Identities = 729/988 (74%), Gaps = 0/988 (0%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 |||| || | ||| || || |||||||||||||||||||||||||||||||||||||| | Sbjct 11162 CAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGA 11103 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | ||| | | ||||||||| || ||| || || || | ||||||| Sbjct 11102 GGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTA 11043 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | |||||||| ||||| || || || ||||| ||||||||||| || |||||||| | | Sbjct 11042 CAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTG 10983 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || || || || || | | || |||||||| || | ||| |||| Sbjct 10982 TGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGT 10923 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||||||||| ||||| || || || | || |||||||||||||||||||||||||| | Sbjct 10922 TGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGT 10863 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 ||||||| |||| || || ||||| || || ||| || || | || || |||| Sbjct 10862 AAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTAGTCT 10803 Query 40888 CCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAA 40947 | || |||| || ||||| || || |||||||| |||| || | | |||||| | Sbjct 10802 CACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGA 10743 Query 40948 AGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGA 41007 | || || ||||| || ||||| |||||||||||||| || |||||||| || || |||| Sbjct 10742 ATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 10683 Query 41008 AGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAAC 41067 | || | |||||||||||| |||||| || || | |||||| |||||||||||||||| Sbjct 10682 ATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAAC 10623 Query 41068 CCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATG 41127 ||||||||| ||| || || | |||||||||| ||||||| | ||||| | ||| | Sbjct 10622 CCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAG 10563 Query 41128 CCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGT 41187 | ||| ||||| || | ||| |||| | | | ||||| ||||||| | ||| || Sbjct 10562 CTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGT 10503 Query 41188 ATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATA 41247 ||| | ||| || || |||||| | || || || || || || || |||||||| | Sbjct 10502 ATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAA 10443 Query 41248 GCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 ||||||| || || | | |||||||||||||||||||| || |||||||| ||||||| Sbjct 10442 GCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAG 10383 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | | || | ||||| ||||| || || ||||| |||||||| | || || || || | Sbjct 10382 ATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTG 10323 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATG 41427 ||||||| || ||||| ||||||||||| || || || ||||| || | ||||| || Sbjct 10322 GCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTG 10263 Query 41428 TGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGT 41487 || || || ||||| | || ||||||| || || |||||||| | ||| || |||| Sbjct 10262 AAGTTGCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAAAGACGGT 10203 Query 41488 TGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | || || ||| | ||| |||||| Sbjct 10202 TCTCAGTTGAAGTAATCCATGAACAAAA 10175 Score = 614 bits (680), Expect = 2e-171 Identities = 729/988 (74%), Gaps = 0/988 (0%) Strand=Plus/Plus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 |||| || | ||| || || |||||||||||||||||||||||||||||||||||||| | Sbjct 35981 CAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGA 36040 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | ||| | | ||||||||| || ||| || || || | ||||||| Sbjct 36041 GGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTA 36100 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | |||||||| ||||| || || || ||||| ||||||||||| || |||||||| | | Sbjct 36101 CAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTG 36160 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || || || || || | | || |||||||| || | ||| |||| Sbjct 36161 TGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGT 36220 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||||||||| ||||| || || || | || |||||||||||||||||||||||||| | Sbjct 36221 TGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGT 36280 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 ||||||| |||| || || ||||| || || ||| || || | || || |||| Sbjct 36281 AAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTAGTCT 36340 Query 40888 CCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAA 40947 | || |||| || ||||| || || |||||||| |||| || | | |||||| | Sbjct 36341 CACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGA 36400 Query 40948 AGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGA 41007 | || || ||||| || ||||| |||||||||||||| || |||||||| || || |||| Sbjct 36401 ATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 36460 Query 41008 AGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAAC 41067 | || | |||||||||||| |||||| || || | |||||| |||||||||||||||| Sbjct 36461 ATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAAC 36520 Query 41068 CCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATG 41127 ||||||||| ||| || || | |||||||||| ||||||| | ||||| | ||| | Sbjct 36521 CCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAG 36580 Query 41128 CCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGT 41187 | ||| ||||| || | ||| |||| | | | ||||| ||||||| | ||| || Sbjct 36581 CTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGT 36640 Query 41188 ATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATA 41247 ||| | ||| || || |||||| | || || || || || || || |||||||| | Sbjct 36641 ATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAA 36700 Query 41248 GCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 ||||||| || || | | |||||||||||||||||||| || |||||||| ||||||| Sbjct 36701 GCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAG 36760 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | | || | ||||| ||||| || || ||||| |||||||| | || || || || | Sbjct 36761 ATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTG 36820 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATG 41427 ||||||| || ||||| ||||||||||| || || || ||||| || | ||||| || Sbjct 36821 GCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTG 36880 Query 41428 TGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGT 41487 || || || ||||| | || ||||||| || || |||||||| | ||| || |||| Sbjct 36881 AAGTTGCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAAAGACGGT 36940 Query 41488 TGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | || || ||| | ||| |||||| Sbjct 36941 TCTCAGTTGAAGTAATCCATGAACAAAA 36968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143702367577146