Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7 122 3e-22 seq3 91.5 4e-13 >seq7 Length=1394110 Score = 122 bits (134), Expect = 3e-22 Identities = 198/280 (71%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 302566 ATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTT 302625 || ||||| ||||| ||| | | || | ||| || ||||| || || || ||| Sbjct 444912 ATGATGTCCTCCATCGCCTTCACCAGTCGCCTCTGGATGTAACCCGTCTCGGACGTCTTT 444853 Query 302626 ACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGT 302685 || || || || || ||||| | ||||| ||||| || |||||||| | ||| | ||| Sbjct 444852 ACCGCGGTGTCGATGAGACCCTCGCGACCGCCCATGGCGTGGAAGAAGAACTCCTGCGG- 444794 Query 302686 CGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC-GGGCGAATCGTCGA 302743 ||| || || | | ||||| |||| || || || || ||||| |||| | |||| Sbjct 444793 CGTGAGGCCGCGCAGGTAGGAGTTCTCGACAAACCCGCGAGCCTCAGGGCCGAG-GTCGT 444735 Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 ||| | |||||| ||||| | ||||| | ||| | ||||| ||||| || || | Sbjct 444734 TCTTCGCAAAGTGCGGCAGCGACCTGTCGGTGAACCCGAACGGGATGCGCTTACCCTCGA 444675 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||||| |||| ||||| ||||||||||| || || Sbjct 444674 CGTTCTGCTGGCCCACGCACGCGATCATCTGCGAGATGTT 444635 >seq3 Length=1759951 Score = 91.5 bits (100), Expect = 4e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 252490 ACAAGCGGTCTCATCGGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAA 252549 || ||||| || |||||| | || || ||||| | | ||||| | | | | | | Sbjct 811215 ACCAGCGGCTTCTGCGGGTAGAAAAGGACGTATGCCAGCGTGTCCATGCGAATCTGAAAG 811156 Query 252550 TTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGA 252609 || || || ||||| || | |||||||| ||||| |||||||||||||| || | || Sbjct 811155 TTGGTCACGTACATGCCCATGGCCTGCTTACCCATCGCACTCTGGTAAGTGTTACGCGGG 811096 Query 252610 GACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGG 252669 |||||||||| |||||||| |||||| || || | |||| ||| || ||| Sbjct 811095 GACTGATTGTGGTCCGGGAAGGGAATGATCGAGGCGCAGATGCCGAGGATCATGGAGGGG 811036 Query 252670 TGAATTTCACAGTGACTGTA 252689 || || || ||||| |||| Sbjct 811035 TGGATCTCGCAGTGGGTGTA 811016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817241704403