Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 3e-15 seq8 82.4 6e-11 >seq10 Length=1160640 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/153 (76%), Gaps = 5/153 (3%) Strand=Plus/Plus Query 105071 CTTGCCGCGCGGACTGCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTG 105130 || |||||| | | ||||||||| ||| | |||||||||||||| |||| ||||||||| Sbjct 191136 CTCGCCGCGGGCAA-GCACGGCTTCCACATCCACGAGTTCGGCGACACCACCAACGGCTG 191194 Query 105131 CACGTCCGCCGGCGAGCACTTCAACCC-TACGCGCCAAAATCACGGCGCTCCAGACGCCG 105189 || |||| |||| ||||||||||| ||| || | | |||||||| || || || Sbjct 191195 CATGTCCACCGGACCCCACTTCAACCCGCACG-GCAAGGACCACGGCGCCCCCACCGACG 191253 Query 105190 CAGAA-AGGCACGTCGGCGACCTGGGCAATGTC 105221 |||| | |||| |||||||| ||||| ||| Sbjct 191254 -AGAACCGCCACGCGGGCGACCTCGGCAACGTC 191285 >seq8 Length=1276107 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| | || ||||| ||||| ||| |||| ||| || | Sbjct 456325 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456266 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| || ||| Sbjct 456265 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 456206 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || | |||||||||||| Sbjct 456205 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAAC 456146 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 456145 ATCCAGAAGGAGTCCACCCTCCACCTTGTG 456116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876707635091