Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1 120 2e-21
>seq1
Length=2053059
Score = 120 bits (132), Expect = 2e-21
Identities = 413/639 (65%), Gaps = 14/639 (2%)
Strand=Plus/Minus
Query 281319 CAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGAT 281378
|||| |||| ||||||| | ||| ||||| || | |||| ||| | | || ||
Sbjct 533100 CAAACTCTTCAGCTTCTTCGACCATCCTCTCTATCTCTTCTTGAGAAAGCCGGCCTTTAT 533041
Query 281379 TATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAA 281438
||| || || || || |||| ||||| |||| || || | ||| ||||| |
Sbjct 533040 CATTTGTGATGGTGATTTTCTCTGATTTCCCTGTTCCCTTGTCTTCAGCACCGACATTCA 532981
Query 281439 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAG 281498
|| ||||| || || | ||||| || || || |||||||| || || | | ||||||
Sbjct 532980 ATATGCCATTTGCGTCAATTTCAAAAGTTACCTCGATTTGAGGAACACCGCGCGGAGCAG 532921
Query 281499 GTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 281558
| || || | | || |||| || || ||| ||||| || | ||| |
Sbjct 532920 GGGGAATGGACGTGAGCTCGAACTTTCCGAGTAGATGATTGTCTTTCGTCATGGCTCGCT 532861
Query 281559 CACCCTCGAAAATTTGGATAGTAACTACAGT---TTGATTATCTGAATAAGTTGTAAATA 281615
| |||||||| | ||| || | || ||| |||||| ||| ||||| ||||||
Sbjct 532860 CCCCCTCGAACACTTGAATCATCAC---AGTCTGTTGATTGTCTTGGTAAGTGGTAAATG 532804
Query 281616 CTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 281674
|||| |||||||| || || ||||| ||| ||| | || ||||||| ||
Sbjct 532803 -TCTGTGATTTTTTGGTCGGGATCACAGTGTTCCTAGGAATCAGCTTTGTCATAACTCCT 532745
Query 281675 CCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 281734
|| | ||||| | || ||| || |||| ||||||| || | || | || |
Sbjct 532744 CCGACGGTTTCGATTCCCTGAGTGAGGGGAGCAACATCAAGAAGCAAGATGTCTTT---T 532688
Query 281735 TTTTCATC---AGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791
||||||| | || ||| || || || |||| | ||| || |||||||||||
Sbjct 532687 GTTTCATCTCCACCTTCCCCAGAGAGGATTCCTCCTTGCACAGCTGCGCCATATGCAACT 532628
Query 281792 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 281851
||||| || || || || | ||| ||| |||||| | ||| | | | || ||
Sbjct 532627 GCTTCGTCGGGGTTGACTCCCTTGTTTGGTTCTTTACCGTCAAAATATTCTCTTAGTAGC 532568
Query 281852 TGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911
| || |||||||| |||| ||| || || || | |||||||||| | ||||||
Sbjct 532567 GCTTGAACTTTAGGAATTCGAGTTGACCCGCCGACAAGGACAATTTCATCGATCTGTGAC 532508
Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGT 281950
|| | || | || |||| | |||||| ||||||
Sbjct 532507 TTTTTCATTCCTGCATCCTCCATGGCTTTTTTGACGGGT 532469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740629467180294
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |