Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq19 650 0.0 >seq19 Length=72585 Score = 650 bits (720), Expect = 0.0 Identities = 733/976 (75%), Gaps = 4/976 (0%) Strand=Plus/Plus Query 28642 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 28701 ||| | ||||| || | ||||||||||| | || ||||| ||| | | ||||| || Sbjct 10184 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 10243 Query 28702 TGTCTCCTTGCAGCCACCATCTG-CTTCATTATTGCATTCATTGCGGCACCACCAGTTGA 28760 | | ||| ||| || | || | ||||| | ||||| ||||| || || || || || Sbjct 10244 ACTTTACTTACAG-CAACTTCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGA 10302 Query 28761 CATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATC 28820 || ||||| ||||| || || || ||||| ||| | || |||||||||||||| || Sbjct 10303 TATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTC 10362 Query 28821 GGGAGCCGTCGTACCGAGCAGC-AATGCCATCGGACTACACTTCTACCCAATTTGGGAAG 28879 || || || | || | || | || || |||||||| |||||||||||||| ||||||| Sbjct 10363 TGGTGCTGTAATCCCTA-CATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAG 10421 Query 28880 CTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACT 28939 | ||| |||||||| ||||| |||||||| || || | ||| ||| | || | |||| Sbjct 10422 CAGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACT 10481 Query 28940 TCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAA 28999 || |||| || | | | | |||||||| || |||||||| ||| | || |||||| Sbjct 10482 TCTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAA 10541 Query 29000 TGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCC 29059 || | || |||||| ||| || ||||| ||||| || ||||| ||| | || || ||| Sbjct 10542 TGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCA 10601 Query 29060 TCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCA 29119 |||| |||||| ||||||| |||||||| || | |||||| | |||||||| || | Sbjct 10602 TCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAA 10661 Query 29120 CCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACA 29179 | ||||||| |||| | || ||||| || || || ||||| || |||||||| ||||||| Sbjct 10662 CTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACA 10721 Query 29180 TGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTG 29239 |||| || |||||||| || |||||||| || || || ||||||||||||||| || | Sbjct 10722 TGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCG 10781 Query 29240 TCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGT 29299 | || || || || | |||||||| ||||| || ||| ||| || ||||||| Sbjct 10782 TAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGT 10841 Query 29300 TTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGA 29359 | |||||||||||||||||||| ||||||||||| || ||||||||||| |||||| | | Sbjct 10842 TCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTA 10901 Query 29360 TCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGC 29419 |||||||||| ||||| ||||| || ||||| || ||||||||||| || ||||| Sbjct 10902 TCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGC 10961 Query 29420 CGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACG 29479 | || | || || |||||| | || |||| |||| || ||||| || || || |||| Sbjct 10962 CAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACG 11021 Query 29480 GTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTG 29539 | || ||||| |||||||| | | || || || ||||| ||||| || ||||||| Sbjct 11022 GATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTG 11081 Query 29540 ATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACT 29599 || | | || || ||||||||||| | ||||||||||| |||||||| ||||| |||| Sbjct 11082 ATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACT 11141 Query 29600 TCCCACTTGATCTGGC 29615 |||||||||| || || Sbjct 11142 TCCCACTTGACCTTGC 11157 Score = 650 bits (720), Expect = 0.0 Identities = 733/976 (75%), Gaps = 4/976 (0%) Strand=Plus/Minus Query 28642 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 28701 ||| | ||||| || | ||||||||||| | || ||||| ||| | | ||||| || Sbjct 36959 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 36900 Query 28702 TGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGA 28760 | | ||| |||| || || | ||||| | ||||| ||||| || || || || || Sbjct 36899 ACTTTACTTACAGCAACT-TCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGA 36841 Query 28761 CATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATC 28820 || ||||| ||||| || || || ||||| ||| | || |||||||||||||| || Sbjct 36840 TATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTC 36781 Query 28821 GGGAGCCGTCGTACCGAGCAGC-AATGCCATCGGACTACACTTCTACCCAATTTGGGAAG 28879 || || || | || | || | || || |||||||| |||||||||||||| ||||||| Sbjct 36780 TGGTGCTGTAATCCCTA-CATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAG 36722 Query 28880 CTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACT 28939 | ||| |||||||| ||||| |||||||| || || | ||| ||| | || | |||| Sbjct 36721 CAGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACT 36662 Query 28940 TCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAA 28999 || |||| || | | | | |||||||| || |||||||| ||| | || |||||| Sbjct 36661 TCTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAA 36602 Query 29000 TGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCC 29059 || | || |||||| ||| || ||||| ||||| || ||||| ||| | || || ||| Sbjct 36601 TGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCA 36542 Query 29060 TCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCA 29119 |||| |||||| ||||||| |||||||| || | |||||| | |||||||| || | Sbjct 36541 TCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAA 36482 Query 29120 CCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACA 29179 | ||||||| |||| | || ||||| || || || ||||| || |||||||| ||||||| Sbjct 36481 CTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACA 36422 Query 29180 TGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTG 29239 |||| || |||||||| || |||||||| || || || ||||||||||||||| || | Sbjct 36421 TGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCG 36362 Query 29240 TCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGT 29299 | || || || || | |||||||| ||||| || ||| ||| || ||||||| Sbjct 36361 TAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGT 36302 Query 29300 TTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGA 29359 | |||||||||||||||||||| ||||||||||| || ||||||||||| |||||| | | Sbjct 36301 TCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTA 36242 Query 29360 TCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGC 29419 |||||||||| ||||| ||||| || ||||| || ||||||||||| || ||||| Sbjct 36241 TCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGC 36182 Query 29420 CGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACG 29479 | || | || || |||||| | || |||| |||| || ||||| || || || |||| Sbjct 36181 CAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACG 36122 Query 29480 GTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTG 29539 | || ||||| |||||||| | | || || || ||||| ||||| || ||||||| Sbjct 36121 GATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTG 36062 Query 29540 ATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACT 29599 || | | || || ||||||||||| | ||||||||||| |||||||| ||||| |||| Sbjct 36061 ATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACT 36002 Query 29600 TCCCACTTGATCTGGC 29615 |||||||||| || || Sbjct 36001 TCCCACTTGACCTTGC 35986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146665566908574