Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq10 109 5e-19 seq1 104 2e-17 >seq10 Length=1160640 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 51736 CGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCGCTGC 51795 |||| ||||| | |||||| ||||||| || | || | || ||||||||||| ||| Sbjct 191286 CGACGTTGCCGAGGTCGCCCGCGTGGCGGTTCTCGTCGGTGGGGGCGCCGTGGTCCTTGC 191227 Query 51796 CGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGT 51855 || ||||||||||| || | ||| ||||||||||| ||||||||||||| |||| Sbjct 191226 CGTGCGGGTTGAAGTGGGGTCCGGTGGACATGCAGCCGTTGGTGGTGTCGCCGAACTCGT 191167 Query 51856 GCACGTGGAATCCGTGCAGGCCC 51878 | | |||||| |||||| |||| Sbjct 191166 GGATGTGGAAGCCGTGCTTGCCC 191144 >seq1 Length=2053059 Score = 104 bits (114), Expect = 2e-17 Identities = 607/958 (63%), Gaps = 28/958 (3%) Strand=Plus/Minus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTC 147518 ||||| ||||| || ||||| || || ||||| || |||| | |||||| || || || Sbjct 2015142 GCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGG-TGTACTCGACAATCTC 2015084 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 || ||| |||||| | || ||| || | || ||||| ||| || || ||||| Sbjct 2015083 GGTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGCA 2015024 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAA 147635 ||| || ||||||||||||||||| || ||||| || || | || | ||| || Sbjct 2015023 CGCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATGGCGAA 2014964 Query 147636 CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTC 147695 || || | ||| || ||| || | | |||||| |||||| || Sbjct 2014963 CC---AGAGCTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGTACTTTTC 2014907 Query 147696 GTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAG-GCCGGGACACTGATGCGGAC 147754 ||||| ||| ||||| ||||| ||||||| || || ||||| | | || || | Sbjct 2014906 GTACAGAGCCTCGAACTCCTCGCCCCAGCAATCCGCGAGACCCGGGGCTTCGTTG-GGGC 2014848 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | || | |||| | ||| || | ||||| ||| |||||||| ||||| Sbjct 2014847 AGAAGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTGGTCCACA 2014788 Query 147815 GCGCGTACATAAGATC----GCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAA 147870 | |||| | || || || ||| | |||| | || | ||||| | Sbjct 2014787 GGCCGTAGAACAGGTCCCTGGCACGCGCCTC-CTCCTTGCCGTGGTTCTTGCG---GAGG 2014732 Query 147871 TTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 | ||| | ||||||| |||||||| || || | ||||| ||| | || ||||| Sbjct 2014731 TCGAGCCAGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCTTTC 2014672 Query 147931 CGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 | ||| |||||||||||||| | | | | ||| |||||| ||||| | |||||| Sbjct 2014671 CTCTTGCCGCCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGG 2014612 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 | |||| | | || ||||||||| ||| | | | ||| || | ||| Sbjct 2014611 ATGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCG 2014552 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTC 148107 || | | | || ||||||||| || |||| || ||| ||||| || | || Sbjct 2014551 TGGATGGACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGAGGGTA 2014492 Query 148108 GTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGC 148167 ||||||||| |||||| || | || | | | | | |||||||| ||| || Sbjct 2014491 TCGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACAGCTGG 2014432 Query 148168 GGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTC 148227 || | || |||| ||| || ||||| |||||| || | | | | Sbjct 2014431 GGGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCATCCAGCGCTCGGAG 2014372 Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287 | |||| | || || || || || | || | | || ||| ||||| | |||||| Sbjct 2014371 AGCATGTGGTAGGTGTCGATGGCCTTCTCCA---CATCCTTGTGGATGCCGATGGCGACG 2014315 Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCC 148346 |||||||||| |||||| || || || | | |||| || || ||| || || | Sbjct 2014314 CGCATGAGCAGGTGCTGGGGGCGCTCCACGATCTTG-CCGTCGACGCGGAGGAGGTA-CG 2014257 Query 148347 AT-TTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGAT 148403 || || || || ||||| || ||||| | ||| ||||| || | ||||| |||| Sbjct 2014256 ATCGCTCCAGAGTCTTGTAGCCGAAGTAATCGTAGTCAAAGTCGCGGTCGTACACGAT 2014199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611086804840