Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq10 109 5e-19
seq1 104 2e-17
>seq10
Length=1160640
Score = 109 bits (120), Expect = 5e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 51736 CGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCGCTGC 51795
|||| ||||| | |||||| ||||||| || | || | || ||||||||||| |||
Sbjct 191286 CGACGTTGCCGAGGTCGCCCGCGTGGCGGTTCTCGTCGGTGGGGGCGCCGTGGTCCTTGC 191227
Query 51796 CGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGT 51855
|| ||||||||||| || | ||| ||||||||||| ||||||||||||| ||||
Sbjct 191226 CGTGCGGGTTGAAGTGGGGTCCGGTGGACATGCAGCCGTTGGTGGTGTCGCCGAACTCGT 191167
Query 51856 GCACGTGGAATCCGTGCAGGCCC 51878
| | |||||| |||||| ||||
Sbjct 191166 GGATGTGGAAGCCGTGCTTGCCC 191144
>seq1
Length=2053059
Score = 104 bits (114), Expect = 2e-17
Identities = 607/958 (63%), Gaps = 28/958 (3%)
Strand=Plus/Minus
Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTC 147518
||||| ||||| || ||||| || || ||||| || |||| | |||||| || || ||
Sbjct 2015142 GCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGG-TGTACTCGACAATCTC 2015084
Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578
|| ||| |||||| | || ||| || | || ||||| ||| || || |||||
Sbjct 2015083 GGTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGCA 2015024
Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAA 147635
||| || ||||||||||||||||| || ||||| || || | || | ||| ||
Sbjct 2015023 CGCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATGGCGAA 2014964
Query 147636 CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTC 147695
|| || | ||| || ||| || | | |||||| |||||| ||
Sbjct 2014963 CC---AGAGCTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGTACTTTTC 2014907
Query 147696 GTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAG-GCCGGGACACTGATGCGGAC 147754
||||| ||| ||||| ||||| ||||||| || || ||||| | | || || |
Sbjct 2014906 GTACAGAGCCTCGAACTCCTCGCCCCAGCAATCCGCGAGACCCGGGGCTTCGTTG-GGGC 2014848
Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814
| | || | |||| | ||| || | ||||| ||| |||||||| |||||
Sbjct 2014847 AGAAGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTGGTCCACA 2014788
Query 147815 GCGCGTACATAAGATC----GCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAA 147870
| |||| | || || || ||| | |||| | || | ||||| |
Sbjct 2014787 GGCCGTAGAACAGGTCCCTGGCACGCGCCTC-CTCCTTGCCGTGGTTCTTGCG---GAGG 2014732
Query 147871 TTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930
| ||| | ||||||| |||||||| || || | ||||| ||| | || |||||
Sbjct 2014731 TCGAGCCAGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCTTTC 2014672
Query 147931 CGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987
| ||| |||||||||||||| | | | | ||| |||||| ||||| | ||||||
Sbjct 2014671 CTCTTGCCGCCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGG 2014612
Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047
| |||| | | || ||||||||| ||| | | | ||| || | |||
Sbjct 2014611 ATGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCG 2014552
Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTC 148107
|| | | | || ||||||||| || |||| || ||| ||||| || | ||
Sbjct 2014551 TGGATGGACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGAGGGTA 2014492
Query 148108 GTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGC 148167
||||||||| |||||| || | || | | | | | |||||||| ||| ||
Sbjct 2014491 TCGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACAGCTGG 2014432
Query 148168 GGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTC 148227
|| | || |||| ||| || ||||| |||||| || | | | |
Sbjct 2014431 GGGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCATCCAGCGCTCGGAG 2014372
Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287
| |||| | || || || || || | || | | || ||| ||||| | ||||||
Sbjct 2014371 AGCATGTGGTAGGTGTCGATGGCCTTCTCCA---CATCCTTGTGGATGCCGATGGCGACG 2014315
Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCC 148346
|||||||||| |||||| || || || | | |||| || || ||| || || |
Sbjct 2014314 CGCATGAGCAGGTGCTGGGGGCGCTCCACGATCTTG-CCGTCGACGCGGAGGAGGTA-CG 2014257
Query 148347 AT-TTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGAT 148403
|| || || || ||||| || ||||| | ||| ||||| || | ||||| ||||
Sbjct 2014256 ATCGCTCCAGAGTCTTGTAGCCGAAGTAATCGTAGTCAAAGTCGCGGTCGTACACGAT 2014199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476611086804840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |