Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_025963.1
Length=139981
Score E
Sequences producing significant alignments: (Bits) Value
seq5 84.2 2e-11
>seq5
Length=1518631
Score = 84.2 bits (92), Expect = 2e-11
Identities = 171/254 (67%), Gaps = 0/254 (0%)
Strand=Plus/Minus
Query 5258 CGCCCGTGGACCCGAATCCCGAGGAGCCGCGCGTCGTGGAGGGCATGCCCTCCACCTCCA 5317
|||| ||||| |||||||| | || || ||||| | || | ||||||||||||
Sbjct 1420314 CGCCGGTGGATCCGAATCCTCCCGCACCTCGGTCCGTGGCGTCCAGGTCCTCCACCTCCA 1420255
Query 5318 TGATGCACGGTCGGCAGAAGCACTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCA 5377
| ||| | || || |||| ||||||||| || |||||||| || | ||
Sbjct 1420254 AAACCTCCGGCGTGGTGATGCGCTCGAGGATGAGCTGAGCGACGCGGTCACCCTTCTTCA 1420195
Query 5378 CCACGAAGGTCTCTTGGCCGAAGTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCG 5437
|| | ||| || | |||| |||||| || | || || | ||| || ||| | ||
Sbjct 1420194 CCTCAAAGTCCTTCTCGCCGTGGTTGAACAGGATGACGCCGACGTTGCCGCGGTAATCGT 1420135
Query 5438 GGTCCACGACGCCCGCTCCCACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCG 5497
||| ||||||||||| || || | ||||| || |||||| |||||||| || |
Sbjct 1420134 AGTCGACGACGCCCGCGCCGGTGTCGATGAAGTGCTTCCACGCGAGTCCGGACCTAGGGG 1420075
Query 5498 CCACGCGACCGTAG 5511
| | ||| |||||
Sbjct 1420074 CGATGCGCGCGTAG 1420061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447811093644840
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