Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq5 105 6e-18 seq8 98.7 9e-16 seq15 95.1 1e-14 seq4 95.1 1e-14 >seq6 Length=1431126 Score = 107 bits (118), Expect = 2e-18 Identities = 172/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 44172 ATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATG-- 44229 |||||| | | |||| ||||| ||| ||||||||| |||||||| | | || | Sbjct 799459 ATGCACGGGTTCCTGCGCATGTACTGGGCCAAGAAGATCCTGGAGTGGACCGGCGAGGGA 799518 Query 44230 -CGCAAACCGCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGC 44288 || | ||||| | || || ||||| ||||||| |||| ||||||||||| Sbjct 799519 CCGGAGGAGGCGCTGCGACGGGCGATTTATCTCAACGACAGGTACCAGCTGGACGGTCGC 799578 Query 44289 GACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTG 44347 || || || || ||||| || || |||||| |||| ||||| || ||||| |||||| || Sbjct 799579 GATCCGAATGGTTACGTCGGGTGCATGTGGGCCATCTGCGGGGTTCACGACCAGGGC-TG 799637 Query 44348 GCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAA 44407 | ||||| | | | ||| || || || |||||||||||| || ||| |||| Sbjct 799638 GAAAGAGCGCGACGTGTTCGGAAAGGTTCGGTACATGAACTACGCGGGGTGCAAGCGAAA 799697 Query 44408 GTTT 44411 |||| Sbjct 799698 GTTT 799701 >seq5 Length=1518631 Score = 105 bits (116), Expect = 6e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 41175 GATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCACGTC 41234 ||||||||||||||| ||||| ||||| || ||||||||| ||||| |||||||| || Sbjct 1420238 GATGCGCTCGAGGATGAGCTGAGCGACGCGGTCACCCTTCTTCACCTCAAAGTCCTTCTC 1420179 Query 41235 GTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGCCAGC 41294 | || ||| | || | | ||| |||||||| ||| ||| |||| |||||| || Sbjct 1420178 GCCGTGGTTGAACAGGATGACGCCGACGTTGCCGCGGTAATCGTAGTCGACGACGCCCGC 1420119 Query 41295 AGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGAT 41342 | ||||||| ||||||| |||| || || || | || ||||| Sbjct 1420118 GCCGGTGTCGATGAAGTGCTTCCACGCGAGTCCGGACCTAGGGGCGAT 1420071 >seq8 Length=1276107 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || |||| || |||||||| || || || Sbjct 456134 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 456193 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 456194 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 456252 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | ||||| || || || || | ||| || | Sbjct 456253 TGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 456312 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 456313 CGAAGATCTGCAT 456325 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || || |||||||| || || || Sbjct 455450 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 455509 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 455510 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 455568 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | ||||| || || || || | ||| || | Sbjct 455569 TGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 455628 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 455629 CGAAGATCTGCAT 455641 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || || |||||||| || || || Sbjct 455678 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 455737 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 455738 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 455796 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | ||||| || || || || | ||| || | Sbjct 455797 TGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 455856 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 455857 CGAAGATCTGCAT 455869 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || || |||||||| || || || Sbjct 455906 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 455965 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 455966 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 456024 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | ||||| || || || || | ||| || | Sbjct 456025 TGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 456084 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 456085 CGAAGATCTGCAT 456097 >seq15 Length=739136 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || |||| || |||||||| ||||| || Sbjct 297707 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 297766 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 297767 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 297825 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | |||||| ||| |||||||| | ||||| || || || || Sbjct 297826 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGT 297874 >seq4 Length=1584431 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | ||| || | || || |||||||| ||||| || Sbjct 22737 CTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 22678 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 22677 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 22619 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | |||||| || |||||||| | ||||| || ||||| || Sbjct 22618 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGT 22570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793492936520