Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq4 132 5e-26
seq8 131 2e-25
seq15 127 2e-24
seq1 93.3 4e-14
seq6 84.2 2e-11
>seq4
Length=1584431
Score = 132 bits (146), Expect = 5e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||||||||| || ||||| ||||| || ||||||||||| |
Sbjct 22772 CCACCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 22713
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | || |||||||| ||||| || || |||| |||||||| ||||| ||
Sbjct 22712 AGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 22653
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || ||||| ||| | |||||||| || |||||
Sbjct 22652 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 22593
Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689
||||| || ||||| ||||||||
Sbjct 22592 TCGAGGGTGATGGTCTTACCGGT 22570
>seq8
Length=1276107
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| ||||| || ||||| ||||| || ||||||||||| |
Sbjct 456099 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 456158
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | ||| |||||||| ||||| || || |||| |||||||| || || ||
Sbjct 456159 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 456218
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || ||||| ||| | |||||||| || || ||
Sbjct 456219 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 456278
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| || ||||| | ||| || ||||| || |||||
Sbjct 456279 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456325
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543
|| || || | ||| || | ||| ||||| || ||||| ||||| || |||||||||||
Sbjct 455412 TTGCCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 455471
Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603
| | ||| | || |||||||| ||||| || || |||| |||||||| || ||
Sbjct 455472 GCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGG 455531
Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663
|| ||||| || || || || || || ||||| ||| | |||||||| || ||
Sbjct 455532 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCG 455591
Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| || ||||| || ||||| | ||| || ||||| || |||||
Sbjct 455592 ACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455641
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| ||||| || ||||| ||||| || ||||||||||| |
Sbjct 455643 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455702
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || |||||||| ||||| || || |||| |||||||| || || ||
Sbjct 455703 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455762
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || ||||| ||| | |||||||| || || ||
Sbjct 455763 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 455822
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| || ||||| | ||| || ||||| || |||||
Sbjct 455823 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455869
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| ||||| || ||||| ||||| || ||||||||||| |
Sbjct 455871 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455930
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || |||||||| ||||| || || |||| |||||||| || || ||
Sbjct 455931 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455990
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || ||||| ||| | |||||||| || || ||
Sbjct 455991 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 456050
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| || ||||| | ||| || ||||| || |||||
Sbjct 456051 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456097
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| ||||| || ||||| ||||| || ||||||||||| |
Sbjct 456327 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 456386
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | ||| |||||||| ||||| || || |||| |||||||| || || ||
Sbjct 456387 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 456446
Query 134607 ATGCCT 134612
||||||
Sbjct 456447 ATGCCT 456452
>seq15
Length=739136
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||||||||| || ||||| ||||| || ||||||||||| |
Sbjct 297672 CCGCCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 297731
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | ||| |||||||| ||||| || || |||| |||||||| || || ||
Sbjct 297732 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 297791
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || ||||| ||| | ||||||||||| |||||
Sbjct 297792 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACC 297851
Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689
||||| || ||||| || |||||
Sbjct 297852 TCGAGGGTGATGGTCTTGCCGGT 297874
>seq1
Length=2053059
Score = 93.3 bits (102), Expect = 4e-14
Identities = 189/280 (68%), Gaps = 3/280 (1%)
Strand=Plus/Plus
Query 7706 TGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGC 7765
|||| |||||||| | | ||||| || || |||||| ||||| ||| | || |
Sbjct 2014437 TGTCGTCGTGTTTCCTCATCGCCATGAAGGAGGATTCCATCGAGGGCATCTACGATACCC 2014496
Query 7766 TGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACG 7825
| || ||||| || ||||| | || |||||| || |||||| | | |||||
Sbjct 2014497 TCAAGGAGTGCGCGTGCATCTCCAAGTCCGCCGGCGGCATCGGTCTGTCCATCCACGACA 2014556
Query 7826 TGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCA 7885
| ||||||| | | | |||| ||||||||||| ||| ||| | ||||
Sbjct 2014557 TCCGCGCCACCTCTTCCTACATCCGCGGCACCAACGGAACCTCCAACGGCATCATCCCCA 2014616
Query 7886 TGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAG---GGGGGAAAGCGCAAAG 7942
|| | ||||| || || || | | | | | || |||||| || || ||| | ||||
Sbjct 2014617 TGCTTCGCGTCTTTAACGACACCGCGAGGTACGTCGACCAGGGCGGCGGCAAGAGGAAAG 2014676
Query 7943 GCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACAT 7982
|||| |||||||| | ||||||||||||||||||||
Sbjct 2014677 GCGCATTCGCCATCTACCTCGAGCCGTGGCACGCGGACAT 2014716
>seq6
Length=1431126
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || ||||| || ||||| ||||| || ||||||||||| |
Sbjct 1414401 CCACCGCGGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 1414342
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | ||| |||||||| ||||| || || || | ||||||||| || || ||
Sbjct 1414341 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCAGGGGGG 1414282
Query 134607 ATGCCT 134612
||||||
Sbjct 1414281 ATGCCT 1414276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505398279967880
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