Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq19 843 0.0 >seq19 Length=72585 Score = 843 bits (934), Expect = 0.0 Identities = 774/976 (79%), Gaps = 2/976 (0%) Strand=Plus/Plus Query 177858 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 177917 ||| | ||||| || | ||||| || || ||||||||||||| ||| | ||||| || Sbjct 10184 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 10243 Query 177918 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 177976 ||| | | |||||||| || || |||||||| || || | |||||||| ||||| || Sbjct 10244 ACTTTACTTACAGCAACT-TCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGA 10302 Query 177977 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTC 178036 ||||| || |||||||| || || |||| ||||| ||||| || |||||||||||||| Sbjct 10303 TATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTC 10362 Query 178037 TGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 178096 |||||| || | || | || ||||| || || ||||||||||| || ||||||||||| Sbjct 10363 TGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGC 10422 Query 178097 CGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTT 178156 || || |||||||||||||| || ||||||||||||| ||| || | |||| |||||| Sbjct 10423 AGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTT 10482 Query 178157 CCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTAT 178216 | |||| || || | | |||||||||| ||||||||||| ||||| | ||||||||| || Sbjct 10483 CTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAAT 10542 Query 178217 GCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCT 178276 ||| || ||||| |||||| ||||||||||| |||||||||||| | || |||||| | Sbjct 10543 GCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCAT 10602 Query 178277 GGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTAC 178336 || || || ||||||| ||||| || ||||| | |||||| ||||| || ||||| || Sbjct 10603 CGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAAC 10662 Query 178337 ATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACAT 178396 ||||||| |||| | || ||||| || || |||||||| || |||||||| |||||||| Sbjct 10663 TTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACAT 10722 Query 178397 GTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGT 178456 | | ||||| || |||||||||||||||||||| ||| ||||||||||||||| | || Sbjct 10723 GCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGT 10782 Query 178457 TACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTT 178516 || || || ||| | ||||| || ||||| | || || ||| || || ||||| Sbjct 10783 AACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGTT 10842 Query 178517 CGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGAT 178576 |||||||||||||||||| ||||||||||| || ||||| || |||||||| ||| | || Sbjct 10843 CGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTAT 10902 Query 178577 CTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCC 178636 ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 10903 CTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCC 10962 Query 178637 TGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGG 178696 ||| | |||||||||||||| || |||| | || ||||| || ||||| || || Sbjct 10963 AGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGG 11022 Query 178697 ATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGA 178756 |||||||||||||||||| | | || | | |||||||| | ||||||||||| || Sbjct 11023 ATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGA 11082 Query 178757 CGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTT 178816 | | |||||||| ||||| |||||||| ||||||||||| ||||| |||||||| Sbjct 11083 TATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTT 11142 Query 178817 CCCGCTTGATCTTGCA 178832 ||| ||||| |||||| Sbjct 11143 CCCACTTGACCTTGCA 11158 Score = 843 bits (934), Expect = 0.0 Identities = 774/976 (79%), Gaps = 2/976 (0%) Strand=Plus/Minus Query 177858 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 177917 ||| | ||||| || | ||||| || || ||||||||||||| ||| | ||||| || Sbjct 36959 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 36900 Query 177918 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 177976 ||| | | |||||||| || || |||||||| || || | |||||||| ||||| || Sbjct 36899 ACTTTACTTACAGCAACT-TCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGA 36841 Query 177977 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTC 178036 ||||| || |||||||| || || |||| ||||| ||||| || |||||||||||||| Sbjct 36840 TATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTC 36781 Query 178037 TGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 178096 |||||| || | || | || ||||| || || ||||||||||| || ||||||||||| Sbjct 36780 TGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGC 36721 Query 178097 CGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTT 178156 || || |||||||||||||| || ||||||||||||| ||| || | |||| |||||| Sbjct 36720 AGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTT 36661 Query 178157 CCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTAT 178216 | |||| || || | | |||||||||| ||||||||||| ||||| | ||||||||| || Sbjct 36660 CTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAAT 36601 Query 178217 GCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCT 178276 ||| || ||||| |||||| ||||||||||| |||||||||||| | || |||||| | Sbjct 36600 GCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCAT 36541 Query 178277 GGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTAC 178336 || || || ||||||| ||||| || ||||| | |||||| ||||| || ||||| || Sbjct 36540 CGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAAC 36481 Query 178337 ATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACAT 178396 ||||||| |||| | || ||||| || || |||||||| || |||||||| |||||||| Sbjct 36480 TTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACAT 36421 Query 178397 GTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGT 178456 | | ||||| || |||||||||||||||||||| ||| ||||||||||||||| | || Sbjct 36420 GCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGT 36361 Query 178457 TACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTT 178516 || || || ||| | ||||| || ||||| | || || ||| || || ||||| Sbjct 36360 AACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGTT 36301 Query 178517 CGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGAT 178576 |||||||||||||||||| ||||||||||| || ||||| || |||||||| ||| | || Sbjct 36300 CGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTAT 36241 Query 178577 CTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCC 178636 ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 36240 CTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCC 36181 Query 178637 TGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGG 178696 ||| | |||||||||||||| || |||| | || ||||| || ||||| || || Sbjct 36180 AGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGG 36121 Query 178697 ATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGA 178756 |||||||||||||||||| | | || | | |||||||| | ||||||||||| || Sbjct 36120 ATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGA 36061 Query 178757 CGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTT 178816 | | |||||||| ||||| |||||||| ||||||||||| ||||| |||||||| Sbjct 36060 TATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTT 36001 Query 178817 CCCGCTTGATCTTGCA 178832 ||| ||||| |||||| Sbjct 36000 CCCACTTGACCTTGCA 35985 Score = 560 bits (620), Expect = 1e-154 Identities = 736/1017 (72%), Gaps = 2/1017 (0%) Strand=Plus/Plus Query 179217 GGGTGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGG 179276 || ||||| || | | ||||||||| |||| || ||||| || || || || |||||| Sbjct 1989 GGATGGTTTGACAACGTAGACGACTGGCTTAAGCGTGATCGTTTCGTATTCGTAGGTTGG 2048 Query 179277 TCTGGACTCCTACTTCTTCCCAC-TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGAC 179335 || ||| | || || |||||| ||| || |||| |||| || ||| ||||||| || Sbjct 2049 TCAGGAATTTTA-TTATTCCCATGTGCATACTTTGCAGTTGGTGGATGGTTTACTGGAAC 2107 Query 179336 AGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAA 179395 | | || || || |||||||| |||||| | || ||||| || |||||||| ||| Sbjct 2108 AACATTCGTAACTTCATGGTACACACACGGTTTAGCAAGTTCATACCTTGAGGGATGTAA 2167 Query 179396 CTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACT 179455 ||| ||||| | || || || || || || | ||||| ||| || |||||||| || Sbjct 2168 CTTCCTTACATCGGCAGTATCAACACCATCTAACAGTATGGCTCACTCACTTCTTCTCCT 2227 Query 179456 TTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAA 179515 |||||| || || | || || | ||| || ||||| || ||||| ||| | |||| Sbjct 2228 TTGGGGACCAGAAGCACAAGGTGAGTTCACACGTTGGTGTCAGCTTGGTGGATTATGGAC 2287 Query 179516 TTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACT 179575 ||||| || || |||||||| |||| | || || || ||||| | ||||||||| | Sbjct 2288 ATTCGTAGCACTTCACGGTGCATTCGGATTAATCGGATTTATGCTCCGTCAATTTGAAAT 2347 Query 179576 TGCTCGCCTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGT 179635 ||| || | || | || ||||| |||||||| || || | ||||| ||||| Sbjct 2348 TGCACGTGCAGTACAAATTCGTCCGTACAACGCGATTGCATTCTCAGCACCTATCGCTGT 2407 Query 179636 ATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTC 179695 ||| || ||| ||||| || || || | ||||| || ||||| || || || || Sbjct 2408 ATTTGTATCTGTATTCCTTATTTACCCACTTGGACAATCAGGATGGTTCTTTGCACCTTC 2467 Query 179696 CTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGAC 179755 |||||||| |||| || ||| | ||| | || ||| | || || |||||||||||||| Sbjct 2468 ATTTGGTGTAGCGGGAATTTTCCGTTTCATTCTTTTCTTCCAAGGGTTCCACAACTGGAC 2527 Query 179756 GCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGC 179815 || ||||| ||||| ||||||||||| |||||| |||| |||| |||||| || |||| Sbjct 2528 ACTTAACCCATTCCACATGATGGGAGTAGCTGGTGTACTTGGAGCAGCACTTCTTTGTGC 2587 Query 179816 TATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTT 179875 || || |||| ||||||||||| ||| | | |||||||| || |||| || || Sbjct 2588 GATTCACGGAGCAACTGTAGAGAACACACTTTTCGAAGATGGTGATGGTTCAAACACTTT 2647 Query 179876 TAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTT 179935 || ||| | | || || | ||||||||||| || ||||| || |||||||| || Sbjct 2648 CCGTGCATTTAACCCAACTCAAGCTGAAGAGACTTACTCAATGGTAACAGCAAACCGTTT 2707 Query 179936 CTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 179995 |||||| ||||| |||||| | || || ||||||||||| |||||||| || || ||| | Sbjct 2708 CTGGTCACAGATTTTCGGTGTAGCTTTCTCTAACAAGCGTTGGCTTCACTTCTTTATGCT 2767 Query 179996 GTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAA 180055 || || ||||| | || |||||| || | |||| || | || | || || || Sbjct 2768 TTTCGTACCTGTAACAGGGTTATGGATGTCAGCACTTGGTGTTGTAGGATTAGCACTTAA 2827 Query 180056 CCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGA 180115 ||| ||||| ||||| |||||| || |||||| | ||||| |||||||| |||||||| Sbjct 2828 CCTCCGTGCATACGACTTCGTATCACAAGAGATCCGTGCAGCTGAAGATCCTGAGTTTGA 2887 Query 180116 GACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGT 180175 || |||||||| ||||| |||||||| || ||||| | ||||||||| ||||| | Sbjct 2888 AACATTCTACACTAAGAATATTCTTCTTAACGAAGGTATTCGTGCATGGATGGCAGCTCA 2947 Query 180176 TGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 ||||| || ||||| | |||||||| || || || || ||| | || || || Sbjct 2948 AGATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGC 3004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606009456072720