Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq19 843 0.0
>seq19
Length=72585
Score = 843 bits (934), Expect = 0.0
Identities = 774/976 (79%), Gaps = 2/976 (0%)
Strand=Plus/Plus
Query 177858 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 177917
||| | ||||| || | ||||| || || ||||||||||||| ||| | ||||| ||
Sbjct 10184 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 10243
Query 177918 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 177976
||| | | |||||||| || || |||||||| || || | |||||||| ||||| ||
Sbjct 10244 ACTTTACTTACAGCAACT-TCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGA 10302
Query 177977 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTC 178036
||||| || |||||||| || || |||| ||||| ||||| || ||||||||||||||
Sbjct 10303 TATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTC 10362
Query 178037 TGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 178096
|||||| || | || | || ||||| || || ||||||||||| || |||||||||||
Sbjct 10363 TGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGC 10422
Query 178097 CGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTT 178156
|| || |||||||||||||| || ||||||||||||| ||| || | |||| ||||||
Sbjct 10423 AGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTT 10482
Query 178157 CCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTAT 178216
| |||| || || | | |||||||||| ||||||||||| ||||| | ||||||||| ||
Sbjct 10483 CTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAAT 10542
Query 178217 GCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCT 178276
||| || ||||| |||||| ||||||||||| |||||||||||| | || |||||| |
Sbjct 10543 GCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCAT 10602
Query 178277 GGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTAC 178336
|| || || ||||||| ||||| || ||||| | |||||| ||||| || ||||| ||
Sbjct 10603 CGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAAC 10662
Query 178337 ATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACAT 178396
||||||| |||| | || ||||| || || |||||||| || |||||||| ||||||||
Sbjct 10663 TTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACAT 10722
Query 178397 GTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGT 178456
| | ||||| || |||||||||||||||||||| ||| ||||||||||||||| | ||
Sbjct 10723 GCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGT 10782
Query 178457 TACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTT 178516
|| || || ||| | ||||| || ||||| | || || ||| || || |||||
Sbjct 10783 AACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGTT 10842
Query 178517 CGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGAT 178576
|||||||||||||||||| ||||||||||| || ||||| || |||||||| ||| | ||
Sbjct 10843 CGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTAT 10902
Query 178577 CTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCC 178636
||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 10903 CTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCC 10962
Query 178637 TGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGG 178696
||| | |||||||||||||| || |||| | || ||||| || ||||| || ||
Sbjct 10963 AGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGG 11022
Query 178697 ATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGA 178756
|||||||||||||||||| | | || | | |||||||| | ||||||||||| ||
Sbjct 11023 ATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGA 11082
Query 178757 CGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTT 178816
| | |||||||| ||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 11083 TATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTT 11142
Query 178817 CCCGCTTGATCTTGCA 178832
||| ||||| ||||||
Sbjct 11143 CCCACTTGACCTTGCA 11158
Score = 843 bits (934), Expect = 0.0
Identities = 774/976 (79%), Gaps = 2/976 (0%)
Strand=Plus/Minus
Query 177858 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 177917
||| | ||||| || | ||||| || || ||||||||||||| ||| | ||||| ||
Sbjct 36959 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 36900
Query 177918 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 177976
||| | | |||||||| || || |||||||| || || | |||||||| ||||| ||
Sbjct 36899 ACTTTACTTACAGCAACT-TCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGA 36841
Query 177977 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTC 178036
||||| || |||||||| || || |||| ||||| ||||| || ||||||||||||||
Sbjct 36840 TATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTC 36781
Query 178037 TGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 178096
|||||| || | || | || ||||| || || ||||||||||| || |||||||||||
Sbjct 36780 TGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGC 36721
Query 178097 CGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTT 178156
|| || |||||||||||||| || ||||||||||||| ||| || | |||| ||||||
Sbjct 36720 AGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTT 36661
Query 178157 CCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTAT 178216
| |||| || || | | |||||||||| ||||||||||| ||||| | ||||||||| ||
Sbjct 36660 CTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAAT 36601
Query 178217 GCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCT 178276
||| || ||||| |||||| ||||||||||| |||||||||||| | || |||||| |
Sbjct 36600 GCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCAT 36541
Query 178277 GGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTAC 178336
|| || || ||||||| ||||| || ||||| | |||||| ||||| || ||||| ||
Sbjct 36540 CGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAAC 36481
Query 178337 ATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACAT 178396
||||||| |||| | || ||||| || || |||||||| || |||||||| ||||||||
Sbjct 36480 TTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACAT 36421
Query 178397 GTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGT 178456
| | ||||| || |||||||||||||||||||| ||| ||||||||||||||| | ||
Sbjct 36420 GCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGT 36361
Query 178457 TACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTT 178516
|| || || ||| | ||||| || ||||| | || || ||| || || |||||
Sbjct 36360 AACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGTT 36301
Query 178517 CGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGAT 178576
|||||||||||||||||| ||||||||||| || ||||| || |||||||| ||| | ||
Sbjct 36300 CGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTAT 36241
Query 178577 CTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCC 178636
||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 36240 CTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCC 36181
Query 178637 TGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGG 178696
||| | |||||||||||||| || |||| | || ||||| || ||||| || ||
Sbjct 36180 AGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGG 36121
Query 178697 ATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGA 178756
|||||||||||||||||| | | || | | |||||||| | ||||||||||| ||
Sbjct 36120 ATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGA 36061
Query 178757 CGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTT 178816
| | |||||||| ||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 36060 TATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTT 36001
Query 178817 CCCGCTTGATCTTGCA 178832
||| ||||| ||||||
Sbjct 36000 CCCACTTGACCTTGCA 35985
Score = 560 bits (620), Expect = 1e-154
Identities = 736/1017 (72%), Gaps = 2/1017 (0%)
Strand=Plus/Plus
Query 179217 GGGTGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGG 179276
|| ||||| || | | ||||||||| |||| || ||||| || || || || ||||||
Sbjct 1989 GGATGGTTTGACAACGTAGACGACTGGCTTAAGCGTGATCGTTTCGTATTCGTAGGTTGG 2048
Query 179277 TCTGGACTCCTACTTCTTCCCAC-TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGAC 179335
|| ||| | || || |||||| ||| || |||| |||| || ||| ||||||| ||
Sbjct 2049 TCAGGAATTTTA-TTATTCCCATGTGCATACTTTGCAGTTGGTGGATGGTTTACTGGAAC 2107
Query 179336 AGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAA 179395
| | || || || |||||||| |||||| | || ||||| || |||||||| |||
Sbjct 2108 AACATTCGTAACTTCATGGTACACACACGGTTTAGCAAGTTCATACCTTGAGGGATGTAA 2167
Query 179396 CTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACT 179455
||| ||||| | || || || || || || | ||||| ||| || |||||||| ||
Sbjct 2168 CTTCCTTACATCGGCAGTATCAACACCATCTAACAGTATGGCTCACTCACTTCTTCTCCT 2227
Query 179456 TTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAA 179515
|||||| || || | || || | ||| || ||||| || ||||| ||| | ||||
Sbjct 2228 TTGGGGACCAGAAGCACAAGGTGAGTTCACACGTTGGTGTCAGCTTGGTGGATTATGGAC 2287
Query 179516 TTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACT 179575
||||| || || |||||||| |||| | || || || ||||| | ||||||||| |
Sbjct 2288 ATTCGTAGCACTTCACGGTGCATTCGGATTAATCGGATTTATGCTCCGTCAATTTGAAAT 2347
Query 179576 TGCTCGCCTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGT 179635
||| || | || | || ||||| |||||||| || || | ||||| |||||
Sbjct 2348 TGCACGTGCAGTACAAATTCGTCCGTACAACGCGATTGCATTCTCAGCACCTATCGCTGT 2407
Query 179636 ATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTC 179695
||| || ||| ||||| || || || | ||||| || ||||| || || || ||
Sbjct 2408 ATTTGTATCTGTATTCCTTATTTACCCACTTGGACAATCAGGATGGTTCTTTGCACCTTC 2467
Query 179696 CTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGAC 179755
|||||||| |||| || ||| | ||| | || ||| | || || ||||||||||||||
Sbjct 2468 ATTTGGTGTAGCGGGAATTTTCCGTTTCATTCTTTTCTTCCAAGGGTTCCACAACTGGAC 2527
Query 179756 GCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGC 179815
|| ||||| ||||| ||||||||||| |||||| |||| |||| |||||| || ||||
Sbjct 2528 ACTTAACCCATTCCACATGATGGGAGTAGCTGGTGTACTTGGAGCAGCACTTCTTTGTGC 2587
Query 179816 TATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTT 179875
|| || |||| ||||||||||| ||| | | |||||||| || |||| || ||
Sbjct 2588 GATTCACGGAGCAACTGTAGAGAACACACTTTTCGAAGATGGTGATGGTTCAAACACTTT 2647
Query 179876 TAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTT 179935
|| ||| | | || || | ||||||||||| || ||||| || |||||||| ||
Sbjct 2648 CCGTGCATTTAACCCAACTCAAGCTGAAGAGACTTACTCAATGGTAACAGCAAACCGTTT 2707
Query 179936 CTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 179995
|||||| ||||| |||||| | || || ||||||||||| |||||||| || || ||| |
Sbjct 2708 CTGGTCACAGATTTTCGGTGTAGCTTTCTCTAACAAGCGTTGGCTTCACTTCTTTATGCT 2767
Query 179996 GTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAA 180055
|| || ||||| | || |||||| || | |||| || | || | || || ||
Sbjct 2768 TTTCGTACCTGTAACAGGGTTATGGATGTCAGCACTTGGTGTTGTAGGATTAGCACTTAA 2827
Query 180056 CCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGA 180115
||| ||||| ||||| |||||| || |||||| | ||||| |||||||| ||||||||
Sbjct 2828 CCTCCGTGCATACGACTTCGTATCACAAGAGATCCGTGCAGCTGAAGATCCTGAGTTTGA 2887
Query 180116 GACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGT 180175
|| |||||||| ||||| |||||||| || ||||| | ||||||||| ||||| |
Sbjct 2888 AACATTCTACACTAAGAATATTCTTCTTAACGAAGGTATTCGTGCATGGATGGCAGCTCA 2947
Query 180176 TGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232
||||| || ||||| | |||||||| || || || || ||| | || || ||
Sbjct 2948 AGATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGC 3004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 606009456072720
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