Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 5e-13 seq7 84.2 7e-11 >seq1 Length=2053059 Score = 91.5 bits (100), Expect = 5e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 256106 TGGACCGAACTGCGCAACCAGATCGAGGAGCACGGACTGCGCAACTCGCAACGATTGGCG 256165 ||||||| || || | ||||| |||||||| | |||||||| | | ||||| Sbjct 2015609 TGGACCGGGCTTCGGACGAAGATCTCCGAGCACGGCGTCCGCAACTCCCTGCTGGTGGCG 2015668 Query 256166 CCCATGCCAACCGCCAGCACCGCTCAAATCCTGGGTAACGTGGAAAGCATCGAACCCCTG 256225 |||||||| ||||| ||| | || || |||| ||| || || |||| || Sbjct 2015669 CCCATGCCCACCGCGTCCACGTCCCAGATTTTGGGCAACAACGAGTGCTTCGAGCCGTAC 2015728 Query 256226 ACTACCAACTTCTTCTCGCGCCGCGTTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 || ||||| ||| | | |||||||| | ||||||||||||| |||| ||||||||| || Sbjct 2015729 ACCTCCAACATCTACGCCCGCCGCGTGCTCTCCGGCGAGTTCACCGTCGTGAACCAGCAC 2015788 >seq7 Length=1394110 Score = 84.2 bits (92), Expect = 7e-11 Identities = 127/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTG-GTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 |||| ||||||||| || || || || ||| || || || | || || ||| || Sbjct 900289 TTCGCCGAGCGACTGGTGGCGTTCGC-GTGCGTGGAGGGCATCTTCTTCTCCGGATCGTT 900347 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | || | ||||||||| | || ||||| || || |||| ||| || ||||| |||| Sbjct 900348 TTGCG-CAATCTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACG 900406 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 | || ||| |||||||||| | || |||||||||||||| || |||||| ||| Sbjct 900407 AGCTCATCTCCAGGGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCCA 900463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335613339455