Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1 201 1e-46
seq6 156 5e-33
seq7 113 6e-20
seq13 104 3e-17
>seq1
Length=2053059
Score = 201 bits (222), Expect = 1e-46
Identities = 622/951 (65%), Gaps = 26/951 (3%)
Strand=Plus/Minus
Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289
|| || ||||| || || | ||||| || || ||||| ||| |||||||| | |
Sbjct 2015148 GGCAGCGCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGGTGTACTCGACA 2015089
Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349
|| || || || | |||||| || || || | |||| ||||| ||| |
Sbjct 2015088 ATCTCGGTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGG 2015029
Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409
||||||||||||||| |||||||||| || | || ||||| ||| || | ||| ||
Sbjct 2015028 TTGCACGCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATG 2014969
Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATGGCGT----TGGCCCGT-CCCTCCGCCTCGT 111464
|| ||| | || ||||| | ||| | ||| | |||||||||||||
Sbjct 2014968 GCGAACCAGA-----GCTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGT 2014914
Query 111465 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTG 111523
||||| ||| || || || |||||||| ||| | || || | |||||| || || | |
Sbjct 2014913 ACTTTTCGTACAGAGCCTCGAACTCCTCGCCC-CAGCAATCCGCGAGACCCGGGGCTTCG 2014855
Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC--TG 111581
| || ||||| || | ||| | || |||| || ||||||||||| || || ||
Sbjct 2014854 TTGGGGCAGAAGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTG 2014795
Query 111582 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641
| |||||||| | || || || || || ||||| || | || ||||| |
Sbjct 2014794 G--TCCACAGGCCGTAGAACAGGTCCCTGGCACGCGCCTCCTCCTTGCCGTGGTTCTTGC 2014737
Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG--- 111698
| | || || | || | ||| ||||||||||| ||||| || |||| |||| |
Sbjct 2014736 GGAGGTCGAGCCAGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGC 2014677
Query 111699 -ATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757
| ||| | | || || | || | || || | ||| ||| ||||||| |||||||||
Sbjct 2014676 CTTTCCTCTTGCCG-CCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGC 2014618
Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 111817
|| || || || || | || || || || || || || || |||| |
Sbjct 2014617 ATGGGGATGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGG 2014558
Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877
| || |||||| || || || || || || |||| ||||| ||| |||||| |
Sbjct 2014557 ATGTCGTGGATGGACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTG 2014498
Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937
|| || | ||||| || | ||| || |||||||| ||||||| ||||| || |||
Sbjct 2014497 AGGGTATCGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGAC 2014438
Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997
| ||| || | || ||||| | |||||||| || || | ||||| | | | |
Sbjct 2014437 AGCTGGGGGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCATCCAGCGC 2014378
Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057
| ||| | | ||| ||| || || | | | || | | ||| ||||||||||||
Sbjct 2014377 TCGGAGAGCATGTGGTAGGTGTCGATGGCCTTCTCCA---CATCCTTGTGGATGCCGATG 2014321
Query 112058 GCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA 112117
||||| ||||||| || || ||| ||| |||| || |||| |||| || | ||
Sbjct 2014320 GCGACGCGCATGAGCAGGTGCTGGGGGCGCTCCACGATCTTGCCGTCGACGCGGAGGAGG 2014261
Query 112118 TA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167
|| | || ||| || || ||| || |||||| | | ||| |||| ||
Sbjct 2014260 TACGATC-GCTCCAGAGTCTTGTAGCCGAAGTAATCGTAGTCAAAGTCGCG 2014211
>seq6
Length=1431126
Score = 156 bits (172), Expect = 5e-33
Identities = 309/450 (69%), Gaps = 8/450 (2%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
|| || || || |||||||| |||||||||||||| || | ||| ||| |||||
Sbjct 1273062 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGGAGGGAGATGAGCTCCATC 1273121
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490
|||| || || || ||||| | | || || | || |||||| ||
Sbjct 1273122 CAGTCGAAAGGGTTGGCTGCGTTGTACTCCTTCGACATGCCGAGCTGGCCGAGGAGGTGA 1273181
Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550
|| | || |||| |||||||||||||| || | |||||| |||| |||| ||
Sbjct 1273182 TCGGCGACGAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCGACGAGGGCGCAG 1273241
Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-GCGTG 122609
||||| ||||| ||| ||| | ||||| ||||| || ||||| || ||||| || ||
Sbjct 1273242 GGGAGCGCGTCGCAGACAAACTCCTTCTCGATCTCGACAGCCTCCTTGACGATCTGCCTG 1273301
Query 122610 --GATAGTTTCGGTAGTGGGTCTA-TTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666
|| | ||| | | | ||| || | | | || ||| |||| |||| ||
Sbjct 1273302 ACGACGGACTCGTTGG-GCTTCTTGTTGATGTACGAGTAGAGGAGG--CACG-CAAAGTC 1273357
Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726
|||| || ||||| || ||| || || || || |||||| || || ||||||||
Sbjct 1273358 GCGGTGAAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAG 1273417
Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786
|| |||||||||| ||| || || | |||||| || |||||||||||||| ||||| |
Sbjct 1273418 GCCGCGCTTCTTCAGCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGAT 1273477
Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816
||||| ||||| | ||||| ||||||||
Sbjct 1273478 GCACGCGAACGCGATCAGGCGCTCGGCGAA 1273507
Score = 111 bits (122), Expect = 2e-19
Identities = 135/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 170019 CCGAAATCGCAAAGCATAACAGCGAACAAGATTGTTGGGTCATAATCAAGGACATTGTTT 170078
|||| | || ||||| |||| ||| || || ||||| || |||| | || ||||
Sbjct 499329 CCGAGGTTGCCAAGCACAACACCGAGGGCGACTGCTGGGTGATTATCAGCGGCAAGGTTT 499270
Query 170079 ATGACCTCACAAAATTCCTTCCAGATCACCCCGGTGGTAAGAAGGCGATCATGCTCTTTG 170138
| ||| | || || || | || || ||||| ||||| |||||||| ||||||||||| |
Sbjct 499269 ACGACGTGACCAAGTTTTTGCCGGACCACCCGGGTGGCAAGAAGGCTATCATGCTCTTCG 499210
Query 170139 CTGGCAAAGATGCAACTGAAGAGTTTGATATGCTTCATCCCCCGAATGTTCTTAAAAAGT 170198
| || || || ||||| || ||||| || ||||| || || || ||||| || || || |
Sbjct 499209 CGGGTAAGGACGCAACGGAGGAGTTCGACATGCTCCACCCTCCCAATGTGCTCAAGAAAT 499150
Query 170199 ACCT 170202
||||
Sbjct 499149 ACCT 499146
>seq7
Length=1394110
Score = 113 bits (124), Expect = 6e-20
Identities = 229/336 (68%), Gaps = 8/336 (2%)
Strand=Plus/Minus
Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544
|| || |||| ||| |||| |||||||||||||| || | |||||| || | |||
Sbjct 900620 AGGCGGTCCGCGACAAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCCACGAGC 900561
Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604
|| | || || || | | ||| | ||||| || || ||||| || || |||||
Sbjct 900560 GCGCACGACAGAGCATCGCACACAAACTCCTTCTCGATGTCCACCGCATCCTTGACGATC 900501
Query 122605 GCGTGGATAGTTTCGGTA----GTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGC 122660
| || | ||| | | |||| | | ||| | | || ||| || |||
Sbjct 900500 TCCTGCAGCCGCGCGGGATCGAGAGGGTGCTTGA-GCATGGAGTAGAGGAGG--CA-GGC 900445
Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720
|| || |||||| ||||| || | ||| || || || || |||||| || || |
Sbjct 900444 GAAGTCGCAGTGGAGGCCCTCGTCCCTGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGCG 900385
Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACC 122780
|||||| || |||||||| | ||| | || ||||| || || |||||||||||||| ||
Sbjct 900384 CATGAGCCCGCGCTTCTTGAGCCAGAAGATTGCGCAAAACGATCCGGAGAAGAAGATGCC 900325
Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816
|||||| ||||| ||||| | || || ||||||||
Sbjct 900324 CTCCACGCACGCGAACGCCACCAGTCGCTCGGCGAA 900289
>seq13
Length=1011177
Score = 104 bits (114), Expect = 3e-17
Identities = 270/407 (66%), Gaps = 6/407 (1%)
Strand=Plus/Plus
Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214
|||| |||| || || || |||| ||| | | || |||||| ||| || || |
Sbjct 859802 CCGCTTCTACCAGGCGTCCACCTCCGAGCTCTACGGCAAGGTTCAGGCCATCCCCCAGGA 859861
Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274
||||| || || |||||||| ||||| |||| ||| | ||| | ||| | ||
Sbjct 859862 TGAGGACACCCCTTTCTACCCCCGCTCCCCTTACGCCGTCGCCAAGATGATGGCGTACTG 859921
Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334
| ||| || ||||||||||| |||| ||| || ||| ||| |||||||||||
Sbjct 859922 GGCCGTGGTCAACTACCGCGAGTCGTACGACATGTACGCCTGCAACGGCATCCTCTTCAA 859981
Query 9335 CCATGAATCACCGAGACGAGGTGCAGAC-TTTGTGACCATGAAGATTACC--GAGGGTAT 9391
||| || || || | || |||| |||| || ||||| ||||| ||| | |||
Sbjct 859982 CCACGAGTCCCCCCGCCGCGGTG-AGACGTTCGTGACGCGCAAGATCACCCTGGCGGTGG 860040
Query 9392 CAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAG 9451
| ||| |||| | || | |||||| | | | | || ||||| |||| || |
Sbjct 860041 CGAAC--ATCAAGGCTGGCAAGCAGGAGTGCCTCTACCTCGGCAACATGGACGCCAAGCG 860098
Query 9452 AGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGA 9511
|| ||||| |||||| ||||| || || |||||| ||||| || || || |
Sbjct 860099 CGACTGGGGCCACGCGCGCGACTACGTCGAGTGCATGTGGAGGATGCTCCAGCAGGACAA 860158
Query 9512 AGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGC 9558
|||| || | ||| || || || || |||||| | | |||||||
Sbjct 860159 GCCCGAGGACTTTGTCGTCGCGACCGGCGAGACCAACACCGTGAGGC 860205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031850842400
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