Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 201 1e-46 seq6 156 5e-33 seq7 113 6e-20 seq13 104 3e-17 >seq1 Length=2053059 Score = 201 bits (222), Expect = 1e-46 Identities = 622/951 (65%), Gaps = 26/951 (3%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || ||||| || || | ||||| || || ||||| ||| |||||||| | | Sbjct 2015148 GGCAGCGCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGGTGTACTCGACA 2015089 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | |||||| || || || | |||| ||||| ||| | Sbjct 2015088 ATCTCGGTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGG 2015029 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||||||||||||| |||||||||| || | || ||||| ||| || | ||| || Sbjct 2015028 TTGCACGCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATG 2014969 Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATGGCGT----TGGCCCGT-CCCTCCGCCTCGT 111464 || ||| | || ||||| | ||| | ||| | ||||||||||||| Sbjct 2014968 GCGAACCAGA-----GCTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGT 2014914 Query 111465 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTG 111523 ||||| ||| || || || |||||||| ||| | || || | |||||| || || | | Sbjct 2014913 ACTTTTCGTACAGAGCCTCGAACTCCTCGCCC-CAGCAATCCGCGAGACCCGGGGCTTCG 2014855 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC--TG 111581 | || ||||| || | ||| | || |||| || ||||||||||| || || || Sbjct 2014854 TTGGGGCAGAAGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTG 2014795 Query 111582 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 | |||||||| | || || || || || ||||| || | || ||||| | Sbjct 2014794 G--TCCACAGGCCGTAGAACAGGTCCCTGGCACGCGCCTCCTCCTTGCCGTGGTTCTTGC 2014737 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG--- 111698 | | || || | || | ||| ||||||||||| ||||| || |||| |||| | Sbjct 2014736 GGAGGTCGAGCCAGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGC 2014677 Query 111699 -ATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 | ||| | | || || | || | || || | ||| ||| ||||||| ||||||||| Sbjct 2014676 CTTTCCTCTTGCCG-CCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGC 2014618 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 111817 || || || || || | || || || || || || || || |||| | Sbjct 2014617 ATGGGGATGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGG 2014558 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | || |||||| || || || || || || |||| ||||| ||| |||||| | Sbjct 2014557 ATGTCGTGGATGGACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTG 2014498 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | ||||| || | ||| || |||||||| ||||||| ||||| || ||| Sbjct 2014497 AGGGTATCGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGAC 2014438 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 | ||| || | || ||||| | |||||||| || || | ||||| | | | | Sbjct 2014437 AGCTGGGGGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCATCCAGCGC 2014378 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 | ||| | | ||| ||| || || | | | || | | ||| |||||||||||| Sbjct 2014377 TCGGAGAGCATGTGGTAGGTGTCGATGGCCTTCTCCA---CATCCTTGTGGATGCCGATG 2014321 Query 112058 GCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA 112117 ||||| ||||||| || || ||| ||| |||| || |||| |||| || | || Sbjct 2014320 GCGACGCGCATGAGCAGGTGCTGGGGGCGCTCCACGATCTTGCCGTCGACGCGGAGGAGG 2014261 Query 112118 TA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || | || ||| || || ||| || |||||| | | ||| |||| || Sbjct 2014260 TACGATC-GCTCCAGAGTCTTGTAGCCGAAGTAATCGTAGTCAAAGTCGCG 2014211 >seq6 Length=1431126 Score = 156 bits (172), Expect = 5e-33 Identities = 309/450 (69%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | ||| ||| ||||| Sbjct 1273062 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGGAGGGAGATGAGCTCCATC 1273121 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 |||| || || || ||||| | | || || | || |||||| || Sbjct 1273122 CAGTCGAAAGGGTTGGCTGCGTTGTACTCCTTCGACATGCCGAGCTGGCCGAGGAGGTGA 1273181 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 || | || |||| |||||||||||||| || | |||||| |||| |||| || Sbjct 1273182 TCGGCGACGAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCGACGAGGGCGCAG 1273241 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-GCGTG 122609 ||||| ||||| ||| ||| | ||||| ||||| || ||||| || ||||| || || Sbjct 1273242 GGGAGCGCGTCGCAGACAAACTCCTTCTCGATCTCGACAGCCTCCTTGACGATCTGCCTG 1273301 Query 122610 --GATAGTTTCGGTAGTGGGTCTA-TTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 || | ||| | | | ||| || | | | || ||| |||| |||| || Sbjct 1273302 ACGACGGACTCGTTGG-GCTTCTTGTTGATGTACGAGTAGAGGAGG--CACG-CAAAGTC 1273357 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 |||| || ||||| || ||| || || || || |||||| || || |||||||| Sbjct 1273358 GCGGTGAAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAG 1273417 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 || |||||||||| ||| || || | |||||| || |||||||||||||| ||||| | Sbjct 1273418 GCCGCGCTTCTTCAGCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGAT 1273477 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 ||||| ||||| | ||||| |||||||| Sbjct 1273478 GCACGCGAACGCGATCAGGCGCTCGGCGAA 1273507 Score = 111 bits (122), Expect = 2e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 170019 CCGAAATCGCAAAGCATAACAGCGAACAAGATTGTTGGGTCATAATCAAGGACATTGTTT 170078 |||| | || ||||| |||| ||| || || ||||| || |||| | || |||| Sbjct 499329 CCGAGGTTGCCAAGCACAACACCGAGGGCGACTGCTGGGTGATTATCAGCGGCAAGGTTT 499270 Query 170079 ATGACCTCACAAAATTCCTTCCAGATCACCCCGGTGGTAAGAAGGCGATCATGCTCTTTG 170138 | ||| | || || || | || || ||||| ||||| |||||||| ||||||||||| | Sbjct 499269 ACGACGTGACCAAGTTTTTGCCGGACCACCCGGGTGGCAAGAAGGCTATCATGCTCTTCG 499210 Query 170139 CTGGCAAAGATGCAACTGAAGAGTTTGATATGCTTCATCCCCCGAATGTTCTTAAAAAGT 170198 | || || || ||||| || ||||| || ||||| || || || ||||| || || || | Sbjct 499209 CGGGTAAGGACGCAACGGAGGAGTTCGACATGCTCCACCCTCCCAATGTGCTCAAGAAAT 499150 Query 170199 ACCT 170202 |||| Sbjct 499149 ACCT 499146 >seq7 Length=1394110 Score = 113 bits (124), Expect = 6e-20 Identities = 229/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 || || |||| ||| |||| |||||||||||||| || | |||||| || | ||| Sbjct 900620 AGGCGGTCCGCGACAAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCCACGAGC 900561 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 || | || || || | | ||| | ||||| || || ||||| || || ||||| Sbjct 900560 GCGCACGACAGAGCATCGCACACAAACTCCTTCTCGATGTCCACCGCATCCTTGACGATC 900501 Query 122605 GCGTGGATAGTTTCGGTA----GTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGC 122660 | || | ||| | | |||| | | ||| | | || ||| || ||| Sbjct 900500 TCCTGCAGCCGCGCGGGATCGAGAGGGTGCTTGA-GCATGGAGTAGAGGAGG--CA-GGC 900445 Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720 || || |||||| ||||| || | ||| || || || || |||||| || || | Sbjct 900444 GAAGTCGCAGTGGAGGCCCTCGTCCCTGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGCG 900385 Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACC 122780 |||||| || |||||||| | ||| | || ||||| || || |||||||||||||| || Sbjct 900384 CATGAGCCCGCGCTTCTTGAGCCAGAAGATTGCGCAAAACGATCCGGAGAAGAAGATGCC 900325 Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 |||||| ||||| ||||| | || || |||||||| Sbjct 900324 CTCCACGCACGCGAACGCCACCAGTCGCTCGGCGAA 900289 >seq13 Length=1011177 Score = 104 bits (114), Expect = 3e-17 Identities = 270/407 (66%), Gaps = 6/407 (1%) Strand=Plus/Plus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| || || || |||| ||| | | || |||||| ||| || || | Sbjct 859802 CCGCTTCTACCAGGCGTCCACCTCCGAGCTCTACGGCAAGGTTCAGGCCATCCCCCAGGA 859861 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 ||||| || || |||||||| ||||| |||| ||| | ||| | ||| | || Sbjct 859862 TGAGGACACCCCTTTCTACCCCCGCTCCCCTTACGCCGTCGCCAAGATGATGGCGTACTG 859921 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||| || ||||||||||| |||| ||| || ||| ||| ||||||||||| Sbjct 859922 GGCCGTGGTCAACTACCGCGAGTCGTACGACATGTACGCCTGCAACGGCATCCTCTTCAA 859981 Query 9335 CCATGAATCACCGAGACGAGGTGCAGAC-TTTGTGACCATGAAGATTACC--GAGGGTAT 9391 ||| || || || | || |||| |||| || ||||| ||||| ||| | ||| Sbjct 859982 CCACGAGTCCCCCCGCCGCGGTG-AGACGTTCGTGACGCGCAAGATCACCCTGGCGGTGG 860040 Query 9392 CAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAG 9451 | ||| |||| | || | |||||| | | | | || ||||| |||| || | Sbjct 860041 CGAAC--ATCAAGGCTGGCAAGCAGGAGTGCCTCTACCTCGGCAACATGGACGCCAAGCG 860098 Query 9452 AGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGA 9511 || ||||| |||||| ||||| || || |||||| ||||| || || || | Sbjct 860099 CGACTGGGGCCACGCGCGCGACTACGTCGAGTGCATGTGGAGGATGCTCCAGCAGGACAA 860158 Query 9512 AGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGC 9558 |||| || | ||| || || || || |||||| | | ||||||| Sbjct 860159 GCCCGAGGACTTTGTCGTCGCGACCGGCGAGACCAACACCGTGAGGC 860205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031850842400