Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1 190 2e-43
seq6 143 3e-29
seq7 131 2e-25
seq5 114 2e-20
seq8 96.9 4e-15
seq14 93.3 5e-14
seq13 89.7 6e-13
>seq1
Length=2053059
Score = 190 bits (210), Expect = 2e-43
Identities = 567/868 (65%), Gaps = 24/868 (3%)
Strand=Plus/Plus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
||| ||| || || |||||||||| |||||||| || || ||| | | || |
Sbjct 2014294 CCCCCAGCACCTGCTCATGCGCGTCGCCATCGGCATCCACAAGGATG---TGGAGAAGGC 2014350
Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
| | || || ||| ||| | | ||| | | | | | ||||| | || || |||||
Sbjct 2014351 CATCGACACCTACCACATGCTCTCCGAGCGCTGGATGACCCACGCGTCCCCCACGCTCTT 2014410
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
||| | ||||| || | ||||| |||| || ||||| ||||||| ||||||||
Sbjct 2014411 CAACTCGGGTACCCCCCGCCCCCAGCTGTCGTCGTGTTTCCTCATCGCCATGAAGGAGGA 2014470
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
|| ||| | || ||||| | || || | |||||| ||| ||||| |||| || ||
Sbjct 2014471 TTCCATCGAGGGCATCTACGATACCCTCAAGGAGTGCGCGTGCATCTCCAAGTCCGCCGG 2014530
Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520
|| || || || |||||| || | | |||| || || || || || ||
Sbjct 2014531 CGGCATCGGTCTGTCCATCCACGACATCCGCGCCACCTCTTCCTACATCCGCGGCACCAA 2014590
Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580
|| || | || || || || ||||||||||| ||||||| ||| ||| | || ||
Sbjct 2014591 CGGAACCTCCAACGGCATCATCCCCATGCTTCGCGTCTTTAACGACACCGCGAGGTACGT 2014650
Query 104581 AAATCAAGCTGGGCGTCGAAAGGGAT----CTATCGCAGTCTATCTTGAGCCATGGCACG 104636
| || | || || | | ||| | | |||| |||| || ||||| |||||||
Sbjct 2014651 CGACCAGGGCGG-CGGCAAGAGGAAAGGCGCATTCGCCATCTACCTCGAGCCGTGGCACG 2014709
Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696
|||| ||| | || | || || | || ||||| || | |||||||||| |||||
Sbjct 2014710 CGGACATCTTCGACTGGCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGCGC-GTGCC 2014768
Query 104697 -GCGATCTCTTCTCCGCTCTCTGGATTCCA--GATCTCTTCATGAAGAGAGTTGAGGAGA 104753
| || || |||| || || |||| ||| ||||| ||||||||| | || |||| |
Sbjct 2014769 AGGGACCTGTTCTACGGCCTGTGGA--CCAACGATCTGTTCATGAAGCGCGTCGAGGCTA 2014826
Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813
||| | ||| | ||||| || || || | || || |||||| | ||| | ||| |
Sbjct 2014827 ACGGCGAGTGGACCCTCTTCTGCCCCAACGAAGCCCCGGGTCTCGCGGATTGCTGGGGCG 2014886
Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT-- 104871
||||||| || || || ||| ||||||||||| || || || | ||||||
Sbjct 2014887 AGGAGTTCGAGGCTCTGTACGAAAAGTACGAGGCGGAGGGCAAGGGTAAGAAGACGGTCA 2014946
Query 104872 ---GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928
||||| || | ||| || || ||| |||| || |||||||||| ||
Sbjct 2014947 AGGCCCAGCAGC-----TCTGGTTCGCCATCCTCGAGTCCCAGGTTGAGACTGGTAACCC 2015001
Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988
|||||||| | ||| || || || |||| ||| || || |||| | || ||
Sbjct 2015002 GTACATGCTCTTCAAGGATGCGTGCAACCGCAAGTCCAACCAGCAGAACCTCGGCACCAT 2015061
Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048
| ||||| ||||| || || || | || | || || ||||| || ||
Sbjct 2015062 CCGATCCTCCAACCTCTGCACCGAGATTGTCGAGTACACCTCGCCGGAGGAGACCGCGGT 2015121
Query 105049 GTGTAACCTCGCATCAATCGCTCTcccc 105076
||| |||||||| || ||||| || |||
Sbjct 2015122 GTGCAACCTCGCGTCCATCGCGCTGCCC 2015149
Score = 113 bits (124), Expect = 5e-20
Identities = 322/484 (67%), Gaps = 16/484 (3%)
Strand=Plus/Plus
Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582
||| ||||| || || || || || |||||| ||||||||||||| ||||||| || ||
Sbjct 974208 ACGGTCAAACCGTCCAGGGCGGAGAAGCGCGGGATCAAGGATATCAGCGCGATTGGTTGC 974267
Query 9583 GGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9640
|||| ||| | | ||| | |||| | ||||| ||||||||||| || || || ||
Sbjct 974268 CGCGACGACGATGACACCGGTATTTCCT--TCAAACCCATCCATCTCAGTTAACAGCTGA 974325
Query 9641 TTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCC 9699
|| | || || || || |||||||| || || | ||||| | ||| ||
Sbjct 974326 TTGAGTGTCTGCTCGCGCTCATCATTACCTCCGCCGA-TACCAGTTCCGCGGGAACGACC 974384
Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 9757
|| || || ||||| || | |||| ||||| || ||| || || |||| |
Sbjct 974385 AACAGCGTCTATCTCGTCGACAAAGATTATGCAAGGAGCATTCTCTTTTGC--CTTCTTA 974442
Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817
|| ||||| || || || ||||| || || ||||||||||| ||||| | | |
Sbjct 974443 AATAGATCACGAACGCGGGAAGCGCCGACGCCGACAAACATCTCGACAAACTCCGACCCA 974502
Query 9818 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876
| | || | | || |||||| | ||||| ||||| || || || || |||||
Sbjct 974503 G-AGATGGAAAAAAATGGGACACCGGCCTCACCAGCAATTGCCTTAGCAAGGAGTGTCTT 974561
Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 9936
|| ||||| || || | || || |||| || || ||||| ||| || |
Sbjct 974562 TCCAGTACCAGGAGGTCCGACTAGAAGAACACCCTTGGGTATTTTGGCACCA--ACCGAT 974619
Query 9937 GT--ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCG 9994
|| |||| || || |||||||||| || |||| ||| || |||| |||||| |
Sbjct 974620 GTGAATCTTTCGGGCCGCTTAAGAAACTCGACAACTTCCATGAAATCATTTTTGGCTTCA 974679
Query 9995 TCAA 9998
||||
Sbjct 974680 TCAA 974683
>seq6
Length=1431126
Score = 143 bits (158), Expect = 3e-29
Identities = 153/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 158816 TTGCGAAGCATAATACCGAAGAAGATTGTTGGGTAATTATCAAAGATATCGTGTATGATC 158875
|||| ||||| || ||||| | || || ||||| ||||||| | | || || ||
Sbjct 499323 TTGCCAAGCACAACACCGAGGGCGACTGCTGGGTGATTATCAGCGGCAAGGTTTACGACG 499264
Query 158876 TCACAAAGTTTTTGCCAGATCATCCAGGTGGCAAGAAGGCGATCATGCTTTTTGCTGGAA 158935
| || ||||||||||| || || || |||||||||||||| |||||||| || || || |
Sbjct 499263 TGACCAAGTTTTTGCCGGACCACCCGGGTGGCAAGAAGGCTATCATGCTCTTCGCGGGTA 499204
Query 158936 AGGATGCGACGGAAGAGTTTGATATGCTCCATCCACCGAATGTTCTAAAGAAGTATCTCA 158995
|||| || ||||| ||||| || |||||||| || || ||||| || ||||| || |||
Sbjct 499203 AGGACGCAACGGAGGAGTTCGACATGCTCCACCCTCCCAATGTGCTCAAGAAATACCTCC 499144
Query 158996 CACCGGAGGTGGTTCTCGGACC 159017
| || |||| | ||||||||
Sbjct 499143 CGCCCGAGGCGTGCCTCGGACC 499122
Score = 134 bits (148), Expect = 2e-26
Identities = 125/159 (79%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857
|| || ||||| || |||| || ||||| | ||||| ||||||||||| || ||||||
Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448
Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917
||| | || || ||||| |||||||| || |||||||| || ||| |||||||||||||
Sbjct 1273447 TGCTCCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAG 1273388
Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956
|| ||| || |||||||| || |||| || ||||||
Sbjct 1273387 CTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCG 1273349
>seq7
Length=1394110
Score = 131 bits (144), Expect = 2e-25
Identities = 117/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857
|| || |||||||| | || || ||||| || ||||| ||||||||||| || || ||
Sbjct 900289 TTCGCCGAGCGACTGGTGGCGTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGGATCGTTT 900348
Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917
||||| || | |||||||||||||| || ||||||| || ||| |||||||||||||
Sbjct 900349 TGCGCAATCTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAG 900408
Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944
|| ||||| | |||||||| ||||||
Sbjct 900409 CTCATCTCCAGGGACGAGGGCCTCCAC 900435
>seq5
Length=1518631
Score = 114 bits (126), Expect = 2e-20
Identities = 243/355 (68%), Gaps = 26/355 (7%)
Strand=Plus/Minus
Query 169168 GAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATA 169227
|||||||||||||||||| ||||||| || ||| ||||||||||||| |||| ||
Sbjct 239364 GAGACCCTTGATGTGGGAGCCGTCGTGGTCCTGATCGGTCATGATCATGATGTGACCGTA 239305
Query 169228 CCGAAG---CT---CGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTT 169281
|| || || |||| || | || | || || | || || | |||||
Sbjct 239304 GCGGAGGCTCTTGGCGGA-----CTCGTACGTGGTG-CCGTGGCGGAGGCCGAGGATCTG 239251
Query 169282 CTTGAGATCGTTGAACTCTTGGTT-----TGATGTGAGCTGTGTGACAGAGGCATCGCGA 169336
||||| | ||| | ||| ||| |||| ||| | ||| | || || |||
Sbjct 239250 CTTGATGTGGTTAATCTCGGCGTTGTTCATGATCTGATC---GTGGCTC--GCGTCACGA 239196
Query 169337 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAG 169396
|| || | ||| || || || |||||||| ||||| |||| ||||| |||||||||
Sbjct 239195 ACGTTGAGAAGCTTACCGCGGAGCGGGAAGACGCCGTATCGATCGCGACCGACGACGGAG 239136
Query 169397 AGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTT 169456
|| || | || || || | ||||||||||||||| ||||| | |||||| || || |
Sbjct 239135 AGGCCGGACACCGCAAGTGCCTTCGCCGAGTCACCTTCGGTAAGGATGAGGGTGCAGTGC 239076
Query 169457 CCAGA-TTG-TGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGT 169509
| || ||| |||| ||||| | ||| || ||||| | |||||||| || ||
Sbjct 239075 TCGGAGTTGCGGCCG--CCCGCGTCGTTGGCGTCATCGAGCTTGGGAATGCCGGT 239023
>seq8
Length=1276107
Score = 96.9 bits (106), Expect = 4e-15
Identities = 177/256 (69%), Gaps = 5/256 (2%)
Strand=Plus/Minus
Query 176505 GTACCTGAAGATCGGAGTGAAGAATAGAGGATGTAATGGTATGACATATACAATGAACTA 176564
|||||| |||||||| ||| | | || || || || ||||| || || ||||||||
Sbjct 1146131 GTACCTCAAGATCGGGGTGCGCACGCGCGGGTGCAACGGGATGACCTACACGATGAACTA 1146072
Query 176565 CGCCGAGGAGGGCGAGAGGAAAAAGTTCGATGAGTTGGTGGAGAC-CGATG---ACGGGG 176620
|||||| || ||||| | | |||||||||||| |||| || || ||| | ||| |
Sbjct 1146071 CGCCGACGACGGCGACAAGGGGAAGTTCGATGAGGTGGT-GACACACGAGGCGAGCGGCG 1146013
Query 176621 CTAAGATTATTATAGAACCAAGCGCATTGATGAATATCATAGGAACTAAGATGGATTACG 176680
||| | || ||||| || ||| ||||| | || | || || |||||||| | ||
Sbjct 1146012 TCAAGGTCATCATAGATCCCGCCGCGCTGATGCACGTCGTCGGCACGAAGATGGACTTCG 1145953
Query 176681 TGAGCGATCGATTGACTAGTGAATTTATCTTTCAGAATCCAAACGCGAAATCGGAATGCG 176740
| | || | ||| || || || | || | ||||| |||||||| || ||||
Sbjct 1145952 TTACGGACAGGTTGCGGAGCGAGTTCGTGTTCGAAAATCCCAACGCGAAGGGCGAGTGCG 1145893
Query 176741 GGTGCGGTGAGTCCTT 176756
| ||||| ||||| ||
Sbjct 1145892 GCTGCGGGGAGTCGTT 1145877
>seq14
Length=832468
Score = 93.3 bits (102), Expect = 5e-14
Identities = 274/414 (66%), Gaps = 20/414 (5%)
Strand=Plus/Minus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
|| || ||||| || || || || ||||| || |||| ||| | ||||||||
Sbjct 528330 CGGTCGAAGCGGCCGGGGCGGAGCAGCGCCGAGTCGAGGACATCCGGCCTGTTCGTCGCC 528271
Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643
|||| ||| | | || || | || || || |||||||| |||| || |||||
Sbjct 528270 GCGAGGACGATGACGCCGGTGTTGCCCTCGAAGCCGTCCATCTCCGTCAGCAGCTGGTTG 528211
Query 9644 ATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACC--ACCAGCACTGCGTTGCTTTC 9698
|| || || || || || || || ||| | | || || ||| || ||| || |
Sbjct 528210 ATCGTCTGCTCGCGCTCGTCGTTACCGCCGCCCATGCCGGACCCGCGCTG----GCGA-C 528156
Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACT 9754
| ||||| || ||||| || |||||||||||||| || ||| ||| || |
Sbjct 528155 CGACGGCGTCGATCTCGTCGATGAAGACGATGCACGGAGCTTTGGATTT----GGCCTTT 528100
Query 9755 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814
|| |||||||| || || ||| ||||| || || || || | ||| ||||| | |
Sbjct 528099 TCGAAGAGATCGCGAACGCGCGACGCGCCGACGCCGACGAAGAGCTCGACAAACTCGGAC 528040
Query 9815 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874
|||| || || ||| ||||| | || ||||| | || |||||| | ||||
Sbjct 528039 GCGGCGCAGGAGAAGAACGGGACGCCCGCCTCGCCCGCGACAGCCTTGGCGAGCAAAGTC 527980
Query 9875 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927
||||| || || || ||| |||||| |||||| | | || |||||||| ||
Sbjct 527979 TTACCGGTGCCGGGGGGACCGACGAGGA-GGCACCCCTTGGGGATCTTGGCTCC 527927
>seq13
Length=1011177
Score = 89.7 bits (98), Expect = 6e-13
Identities = 230/346 (66%), Gaps = 6/346 (2%)
Strand=Plus/Plus
Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351
||||| || || |||||||| ||||| |||| ||| | ||| | ||| | |||
Sbjct 859863 GAGGACACCCCTTTCTACCCCCGCTCCCCTTACGCCGTCGCCAAGATGATGGCGTACTGG 859922
Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411
||| || ||||||||||| |||| ||| || ||| ||| ||||||||||||
Sbjct 859923 GCCGTGGTCAACTACCGCGAGTCGTACGACATGTACGCCTGCAACGGCATCCTCTTCAAC 859982
Query 7412 CATGAATCACCGAGACGAGGTGCAGAC-TTTGTCACAAAGAAGATTACC--GAGGGTATC 7468
|| || || || | || |||| |||| || || || ||||| ||| | ||| |
Sbjct 859983 CACGAGTCCCCCCGCCGCGGTG-AGACGTTCGTGACGCGCAAGATCACCCTGGCGGTGGC 860041
Query 7469 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGA 7528
||| |||| | || | |||||| | | | | || ||||| |||| | |
Sbjct 860042 GAAC--ATCAAGGCTGGCAAGCAGGAGTGCCTCTACCTCGGCAACATGGACGCCAAGCGC 860099
Query 7529 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAA 7588
|| ||||| |||||| ||||| || || |||||| ||||| || || || |
Sbjct 860100 GACTGGGGCCACGCGCGCGACTACGTCGAGTGCATGTGGAGGATGCTCCAGCAGGACAAG 860159
Query 7589 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCATACAGTGAGGC 7634
|||| || | ||| || || || || |||||| | || |||||||
Sbjct 860160 CCCGAGGACTTTGTCGTCGCGACCGGCGAGACCAACACCGTGAGGC 860205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260661475560
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