Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 190 2e-43 seq6 143 3e-29 seq7 131 2e-25 seq5 114 2e-20 seq8 96.9 4e-15 seq14 93.3 5e-14 seq13 89.7 6e-13 >seq1 Length=2053059 Score = 190 bits (210), Expect = 2e-43 Identities = 567/868 (65%), Gaps = 24/868 (3%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| || || |||||||||| |||||||| || || ||| | | || | Sbjct 2014294 CCCCCAGCACCTGCTCATGCGCGTCGCCATCGGCATCCACAAGGATG---TGGAGAAGGC 2014350 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | || || ||| ||| | | ||| | | | | | ||||| | || || ||||| Sbjct 2014351 CATCGACACCTACCACATGCTCTCCGAGCGCTGGATGACCCACGCGTCCCCCACGCTCTT 2014410 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| | ||||| || | ||||| |||| || ||||| ||||||| |||||||| Sbjct 2014411 CAACTCGGGTACCCCCCGCCCCCAGCTGTCGTCGTGTTTCCTCATCGCCATGAAGGAGGA 2014470 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || ||| | || ||||| | || || | |||||| ||| ||||| |||| || || Sbjct 2014471 TTCCATCGAGGGCATCTACGATACCCTCAAGGAGTGCGCGTGCATCTCCAAGTCCGCCGG 2014530 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 || || || || |||||| || | | |||| || || || || || || Sbjct 2014531 CGGCATCGGTCTGTCCATCCACGACATCCGCGCCACCTCTTCCTACATCCGCGGCACCAA 2014590 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || || | || || || || ||||||||||| ||||||| ||| ||| | || || Sbjct 2014591 CGGAACCTCCAACGGCATCATCCCCATGCTTCGCGTCTTTAACGACACCGCGAGGTACGT 2014650 Query 104581 AAATCAAGCTGGGCGTCGAAAGGGAT----CTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | || | || || | | ||| | | |||| |||| || ||||| ||||||| Sbjct 2014651 CGACCAGGGCGG-CGGCAAGAGGAAAGGCGCATTCGCCATCTACCTCGAGCCGTGGCACG 2014709 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 |||| ||| | || | || || | || ||||| || | |||||||||| ||||| Sbjct 2014710 CGGACATCTTCGACTGGCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGCGC-GTGCC 2014768 Query 104697 -GCGATCTCTTCTCCGCTCTCTGGATTCCA--GATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | || || |||| || || |||| ||| ||||| ||||||||| | || |||| | Sbjct 2014769 AGGGACCTGTTCTACGGCCTGTGGA--CCAACGATCTGTTCATGAAGCGCGTCGAGGCTA 2014826 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 ||| | ||| | ||||| || || || | || || |||||| | ||| | ||| | Sbjct 2014827 ACGGCGAGTGGACCCTCTTCTGCCCCAACGAAGCCCCGGGTCTCGCGGATTGCTGGGGCG 2014886 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT-- 104871 ||||||| || || || ||| ||||||||||| || || || | |||||| Sbjct 2014887 AGGAGTTCGAGGCTCTGTACGAAAAGTACGAGGCGGAGGGCAAGGGTAAGAAGACGGTCA 2014946 Query 104872 ---GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 ||||| || | ||| || || ||| |||| || |||||||||| || Sbjct 2014947 AGGCCCAGCAGC-----TCTGGTTCGCCATCCTCGAGTCCCAGGTTGAGACTGGTAACCC 2015001 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 |||||||| | ||| || || || |||| ||| || || |||| | || || Sbjct 2015002 GTACATGCTCTTCAAGGATGCGTGCAACCGCAAGTCCAACCAGCAGAACCTCGGCACCAT 2015061 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | ||||| ||||| || || || | || | || || ||||| || || Sbjct 2015062 CCGATCCTCCAACCTCTGCACCGAGATTGTCGAGTACACCTCGCCGGAGGAGACCGCGGT 2015121 Query 105049 GTGTAACCTCGCATCAATCGCTCTcccc 105076 ||| |||||||| || ||||| || ||| Sbjct 2015122 GTGCAACCTCGCGTCCATCGCGCTGCCC 2015149 Score = 113 bits (124), Expect = 5e-20 Identities = 322/484 (67%), Gaps = 16/484 (3%) Strand=Plus/Plus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||| ||||| || || || || || |||||| ||||||||||||| ||||||| || || Sbjct 974208 ACGGTCAAACCGTCCAGGGCGGAGAAGCGCGGGATCAAGGATATCAGCGCGATTGGTTGC 974267 Query 9583 GGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9640 |||| ||| | | ||| | |||| | ||||| ||||||||||| || || || || Sbjct 974268 CGCGACGACGATGACACCGGTATTTCCT--TCAAACCCATCCATCTCAGTTAACAGCTGA 974325 Query 9641 TTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCC 9699 || | || || || || |||||||| || || | ||||| | ||| || Sbjct 974326 TTGAGTGTCTGCTCGCGCTCATCATTACCTCCGCCGA-TACCAGTTCCGCGGGAACGACC 974384 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 9757 || || || ||||| || | |||| ||||| || ||| || || |||| | Sbjct 974385 AACAGCGTCTATCTCGTCGACAAAGATTATGCAAGGAGCATTCTCTTTTGC--CTTCTTA 974442 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || ||||| || || || ||||| || || ||||||||||| ||||| | | | Sbjct 974443 AATAGATCACGAACGCGGGAAGCGCCGACGCCGACAAACATCTCGACAAACTCCGACCCA 974502 Query 9818 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 | | || | | || |||||| | ||||| ||||| || || || || ||||| Sbjct 974503 G-AGATGGAAAAAAATGGGACACCGGCCTCACCAGCAATTGCCTTAGCAAGGAGTGTCTT 974561 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 9936 || ||||| || || | || || |||| || || ||||| ||| || | Sbjct 974562 TCCAGTACCAGGAGGTCCGACTAGAAGAACACCCTTGGGTATTTTGGCACCA--ACCGAT 974619 Query 9937 GT--ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCG 9994 || |||| || || |||||||||| || |||| ||| || |||| |||||| | Sbjct 974620 GTGAATCTTTCGGGCCGCTTAAGAAACTCGACAACTTCCATGAAATCATTTTTGGCTTCA 974679 Query 9995 TCAA 9998 |||| Sbjct 974680 TCAA 974683 >seq6 Length=1431126 Score = 143 bits (158), Expect = 3e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 158816 TTGCGAAGCATAATACCGAAGAAGATTGTTGGGTAATTATCAAAGATATCGTGTATGATC 158875 |||| ||||| || ||||| | || || ||||| ||||||| | | || || || Sbjct 499323 TTGCCAAGCACAACACCGAGGGCGACTGCTGGGTGATTATCAGCGGCAAGGTTTACGACG 499264 Query 158876 TCACAAAGTTTTTGCCAGATCATCCAGGTGGCAAGAAGGCGATCATGCTTTTTGCTGGAA 158935 | || ||||||||||| || || || |||||||||||||| |||||||| || || || | Sbjct 499263 TGACCAAGTTTTTGCCGGACCACCCGGGTGGCAAGAAGGCTATCATGCTCTTCGCGGGTA 499204 Query 158936 AGGATGCGACGGAAGAGTTTGATATGCTCCATCCACCGAATGTTCTAAAGAAGTATCTCA 158995 |||| || ||||| ||||| || |||||||| || || ||||| || ||||| || ||| Sbjct 499203 AGGACGCAACGGAGGAGTTCGACATGCTCCACCCTCCCAATGTGCTCAAGAAATACCTCC 499144 Query 158996 CACCGGAGGTGGTTCTCGGACC 159017 | || |||| | |||||||| Sbjct 499143 CGCCCGAGGCGTGCCTCGGACC 499122 Score = 134 bits (148), Expect = 2e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || ||||| || |||| || ||||| | ||||| ||||||||||| || |||||| Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||| | || || ||||| |||||||| || |||||||| || ||| ||||||||||||| Sbjct 1273447 TGCTCCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAG 1273388 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||| || |||||||| || |||| || |||||| Sbjct 1273387 CTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCG 1273349 >seq7 Length=1394110 Score = 131 bits (144), Expect = 2e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || |||||||| | || || ||||| || ||||| ||||||||||| || || || Sbjct 900289 TTCGCCGAGCGACTGGTGGCGTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGGATCGTTT 900348 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| || | |||||||||||||| || ||||||| || ||| ||||||||||||| Sbjct 900349 TGCGCAATCTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAG 900408 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| | |||||||| |||||| Sbjct 900409 CTCATCTCCAGGGACGAGGGCCTCCAC 900435 >seq5 Length=1518631 Score = 114 bits (126), Expect = 2e-20 Identities = 243/355 (68%), Gaps = 26/355 (7%) Strand=Plus/Minus Query 169168 GAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATA 169227 |||||||||||||||||| ||||||| || ||| ||||||||||||| |||| || Sbjct 239364 GAGACCCTTGATGTGGGAGCCGTCGTGGTCCTGATCGGTCATGATCATGATGTGACCGTA 239305 Query 169228 CCGAAG---CT---CGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTT 169281 || || || |||| || | || | || || | || || | ||||| Sbjct 239304 GCGGAGGCTCTTGGCGGA-----CTCGTACGTGGTG-CCGTGGCGGAGGCCGAGGATCTG 239251 Query 169282 CTTGAGATCGTTGAACTCTTGGTT-----TGATGTGAGCTGTGTGACAGAGGCATCGCGA 169336 ||||| | ||| | ||| ||| |||| ||| | ||| | || || ||| Sbjct 239250 CTTGATGTGGTTAATCTCGGCGTTGTTCATGATCTGATC---GTGGCTC--GCGTCACGA 239196 Query 169337 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAG 169396 || || | ||| || || || |||||||| ||||| |||| ||||| ||||||||| Sbjct 239195 ACGTTGAGAAGCTTACCGCGGAGCGGGAAGACGCCGTATCGATCGCGACCGACGACGGAG 239136 Query 169397 AGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTT 169456 || || | || || || | ||||||||||||||| ||||| | |||||| || || | Sbjct 239135 AGGCCGGACACCGCAAGTGCCTTCGCCGAGTCACCTTCGGTAAGGATGAGGGTGCAGTGC 239076 Query 169457 CCAGA-TTG-TGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGT 169509 | || ||| |||| ||||| | ||| || ||||| | |||||||| || || Sbjct 239075 TCGGAGTTGCGGCCG--CCCGCGTCGTTGGCGTCATCGAGCTTGGGAATGCCGGT 239023 >seq8 Length=1276107 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/256 (69%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 176505 GTACCTGAAGATCGGAGTGAAGAATAGAGGATGTAATGGTATGACATATACAATGAACTA 176564 |||||| |||||||| ||| | | || || || || ||||| || || |||||||| Sbjct 1146131 GTACCTCAAGATCGGGGTGCGCACGCGCGGGTGCAACGGGATGACCTACACGATGAACTA 1146072 Query 176565 CGCCGAGGAGGGCGAGAGGAAAAAGTTCGATGAGTTGGTGGAGAC-CGATG---ACGGGG 176620 |||||| || ||||| | | |||||||||||| |||| || || ||| | ||| | Sbjct 1146071 CGCCGACGACGGCGACAAGGGGAAGTTCGATGAGGTGGT-GACACACGAGGCGAGCGGCG 1146013 Query 176621 CTAAGATTATTATAGAACCAAGCGCATTGATGAATATCATAGGAACTAAGATGGATTACG 176680 ||| | || ||||| || ||| ||||| | || | || || |||||||| | || Sbjct 1146012 TCAAGGTCATCATAGATCCCGCCGCGCTGATGCACGTCGTCGGCACGAAGATGGACTTCG 1145953 Query 176681 TGAGCGATCGATTGACTAGTGAATTTATCTTTCAGAATCCAAACGCGAAATCGGAATGCG 176740 | | || | ||| || || || | || | ||||| |||||||| || |||| Sbjct 1145952 TTACGGACAGGTTGCGGAGCGAGTTCGTGTTCGAAAATCCCAACGCGAAGGGCGAGTGCG 1145893 Query 176741 GGTGCGGTGAGTCCTT 176756 | ||||| ||||| || Sbjct 1145892 GCTGCGGGGAGTCGTT 1145877 >seq14 Length=832468 Score = 93.3 bits (102), Expect = 5e-14 Identities = 274/414 (66%), Gaps = 20/414 (5%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || || ||||| || || || || ||||| || |||| ||| | |||||||| Sbjct 528330 CGGTCGAAGCGGCCGGGGCGGAGCAGCGCCGAGTCGAGGACATCCGGCCTGTTCGTCGCC 528271 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 |||| ||| | | || || | || || || |||||||| |||| || ||||| Sbjct 528270 GCGAGGACGATGACGCCGGTGTTGCCCTCGAAGCCGTCCATCTCCGTCAGCAGCTGGTTG 528211 Query 9644 ATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACC--ACCAGCACTGCGTTGCTTTC 9698 || || || || || || || || ||| | | || || ||| || ||| || | Sbjct 528210 ATCGTCTGCTCGCGCTCGTCGTTACCGCCGCCCATGCCGGACCCGCGCTG----GCGA-C 528156 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACT 9754 | ||||| || ||||| || |||||||||||||| || ||| ||| || | Sbjct 528155 CGACGGCGTCGATCTCGTCGATGAAGACGATGCACGGAGCTTTGGATTT----GGCCTTT 528100 Query 9755 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 || |||||||| || || ||| ||||| || || || || | ||| ||||| | | Sbjct 528099 TCGAAGAGATCGCGAACGCGCGACGCGCCGACGCCGACGAAGAGCTCGACAAACTCGGAC 528040 Query 9815 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 |||| || || ||| ||||| | || ||||| | || |||||| | |||| Sbjct 528039 GCGGCGCAGGAGAAGAACGGGACGCCCGCCTCGCCCGCGACAGCCTTGGCGAGCAAAGTC 527980 Query 9875 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 ||||| || || || ||| |||||| |||||| | | || |||||||| || Sbjct 527979 TTACCGGTGCCGGGGGGACCGACGAGGA-GGCACCCCTTGGGGATCTTGGCTCC 527927 >seq13 Length=1011177 Score = 89.7 bits (98), Expect = 6e-13 Identities = 230/346 (66%), Gaps = 6/346 (2%) Strand=Plus/Plus Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||||| || || |||||||| ||||| |||| ||| | ||| | ||| | ||| Sbjct 859863 GAGGACACCCCTTTCTACCCCCGCTCCCCTTACGCCGTCGCCAAGATGATGGCGTACTGG 859922 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||| || ||||||||||| |||| ||| || ||| ||| |||||||||||| Sbjct 859923 GCCGTGGTCAACTACCGCGAGTCGTACGACATGTACGCCTGCAACGGCATCCTCTTCAAC 859982 Query 7412 CATGAATCACCGAGACGAGGTGCAGAC-TTTGTCACAAAGAAGATTACC--GAGGGTATC 7468 || || || || | || |||| |||| || || || ||||| ||| | ||| | Sbjct 859983 CACGAGTCCCCCCGCCGCGGTG-AGACGTTCGTGACGCGCAAGATCACCCTGGCGGTGGC 860041 Query 7469 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGA 7528 ||| |||| | || | |||||| | | | | || ||||| |||| | | Sbjct 860042 GAAC--ATCAAGGCTGGCAAGCAGGAGTGCCTCTACCTCGGCAACATGGACGCCAAGCGC 860099 Query 7529 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAA 7588 || ||||| |||||| ||||| || || |||||| ||||| || || || | Sbjct 860100 GACTGGGGCCACGCGCGCGACTACGTCGAGTGCATGTGGAGGATGCTCCAGCAGGACAAG 860159 Query 7589 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCATACAGTGAGGC 7634 |||| || | ||| || || || || |||||| | || ||||||| Sbjct 860160 CCCGAGGACTTTGTCGTCGCGACCGGCGAGACCAACACCGTGAGGC 860205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260661475560