Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 2e-17
>seq1
Length=2053059
Score = 105 bits (116), Expect = 2e-17
Identities = 175/253 (69%), Gaps = 6/253 (2%)
Strand=Plus/Plus
Query 349626 CAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGT 349685
|||| ||||| ||||| |||||| | || ||||||||||| || | ||| | || |
Sbjct 531900 CAGCATATTTCAATGACGCCCAGAGGCAAGCCACAAAAGATGCCGGTACCATCTCTGGTT 531959
Query 349686 TAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATA 349745
| ||||| |||| || ||||| || || || || |||||||||||||| | || |
Sbjct 531960 TGAATGTCGCGCGAATTATCAATGAGCCAACAGCAGCTGCAATTGCATATGGCTTGGACA 532019
Query 349746 AAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATG 349805
||| | ||||| ||||| || |||||||| | || ||||| || || || |
Sbjct 532020 AAA------AAGGCGAAAAGAATATACTCGTTTTTGATCTTGGAGGTGGAACATTCGACG 532073
Query 349806 TATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACAC 349865
|||| |||| || | || | || |||||||||| | |||| ||| || || |
Sbjct 532074 TATCCATACTGACTATAGACAACGGTGTTTTTGAAGTCGTATCAACAAATGGAGACACTC 532133
Query 349866 ATCTTGGTGGAGA 349878
|||| || || ||
Sbjct 532134 ATCTCGGAGGTGA 532146
Score = 95.1 bits (104), Expect = 4e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260
||| || ||||| | || || || || || || |||| ||| | |||| ||
Sbjct 531326 TATTGGTATCGACCTCGGCACGACGTACTCATGCGTTGGTGTCTACGTCAATGGCAAGGT 531385
Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320
|| || ||||| ||||| ||||| ||| | | || || || |||||||| || || ||
Sbjct 531386 CGAGATCATTGCTAATGACCAAGGGAACCGTATTACCCCTTCGTACGTTGCGTTCACGGA 531445
Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATAC 349380
|| ||| | || || ||| |||| || ||||| || |||| ||||||| | ||
Sbjct 531446 CGGCGAACGTCTCATCGGCGATGCTGCTAAGAATCAGGCCACTGCGAATCCAACACGCAC 531505
Query 349381 GGTTTTTGATGCTAAGCGACTTATTGGTAGAA 349412
||||||||| || ||||| || ||||| ||||
Sbjct 531506 GGTTTTTGACGCCAAGCGCCTGATTGGCAGAA 531537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515254031130257
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |