Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 105 2e-17 >seq1 Length=2053059 Score = 105 bits (116), Expect = 2e-17 Identities = 175/253 (69%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 349626 CAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGT 349685 |||| ||||| ||||| |||||| | || ||||||||||| || | ||| | || | Sbjct 531900 CAGCATATTTCAATGACGCCCAGAGGCAAGCCACAAAAGATGCCGGTACCATCTCTGGTT 531959 Query 349686 TAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATA 349745 | ||||| |||| || ||||| || || || || |||||||||||||| | || | Sbjct 531960 TGAATGTCGCGCGAATTATCAATGAGCCAACAGCAGCTGCAATTGCATATGGCTTGGACA 532019 Query 349746 AAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATG 349805 ||| | ||||| ||||| || |||||||| | || ||||| || || || | Sbjct 532020 AAA------AAGGCGAAAAGAATATACTCGTTTTTGATCTTGGAGGTGGAACATTCGACG 532073 Query 349806 TATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACAC 349865 |||| |||| || | || | || |||||||||| | |||| ||| || || | Sbjct 532074 TATCCATACTGACTATAGACAACGGTGTTTTTGAAGTCGTATCAACAAATGGAGACACTC 532133 Query 349866 ATCTTGGTGGAGA 349878 |||| || || || Sbjct 532134 ATCTCGGAGGTGA 532146 Score = 95.1 bits (104), Expect = 4e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260 ||| || ||||| | || || || || || || |||| ||| | |||| || Sbjct 531326 TATTGGTATCGACCTCGGCACGACGTACTCATGCGTTGGTGTCTACGTCAATGGCAAGGT 531385 Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320 || || ||||| ||||| ||||| ||| | | || || || |||||||| || || || Sbjct 531386 CGAGATCATTGCTAATGACCAAGGGAACCGTATTACCCCTTCGTACGTTGCGTTCACGGA 531445 Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATAC 349380 || ||| | || || ||| |||| || ||||| || |||| ||||||| | || Sbjct 531446 CGGCGAACGTCTCATCGGCGATGCTGCTAAGAATCAGGCCACTGCGAATCCAACACGCAC 531505 Query 349381 GGTTTTTGATGCTAAGCGACTTATTGGTAGAA 349412 ||||||||| || ||||| || ||||| |||| Sbjct 531506 GGTTTTTGACGCCAAGCGCCTGATTGGCAGAA 531537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254031130257