Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1 215 6e-51
seq8 167 3e-36
seq5 145 9e-30
seq4 141 1e-28
seq15 132 5e-26
seq6 100 3e-16
>seq1
Length=2053059
Score = 215 bits (238), Expect = 6e-51
Identities = 501/750 (67%), Gaps = 9/750 (1%)
Strand=Plus/Minus
Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966
|||||| || |||||||| || ||| || | || ||||||| || || |||||
Sbjct 2015137 GGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGGTGTACTCGACAATCTCGGTGCA 2015078
Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026
| || || || || || || ||||| | |||||| |||||| |||||| || ||
Sbjct 2015077 GAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGCACGCATC 2015018
Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086
|||| || |||||||||| |||| ||||| ||||| |||| |||||||||| ||| |
Sbjct 2015017 CTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATGGCGAACCAGAG 2014958
Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146
|| | ||||||||| ||| ||||| || ||| | ||||| |||| |
Sbjct 2014957 CTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGTACTTTTCGTACAGAGC 2014898
Query 81147 GTCGAACT--TGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204
||||||| | || || || || | ||| | ||| ||||| ||||| | |||
Sbjct 2014897 CTCGAACTCCTCGCCCCAGCAA--TCCGCGAGACCCGGGGCTTCGTTGGGGCAGAAGAGG 2014840
Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264
||| ||| || ||| || ||||||||| || | |||| ||| || |
Sbjct 2014839 GTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTGGTCCACAGGCCGTAG 2014780
Query 81265 AACAGGTCGC-GGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323
|||||||| | |||| ||||||||||| | || ||||| ||| | ||||| ||||
Sbjct 2014779 AACAGGTCCCTGGCA-CGCGCCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGCCAGTC 2014721
Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGC---GACGGCC 81380
| ||||||||| ||||| ||||| || || | ||||| | || || | | |||
Sbjct 2014720 GAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCTTTCCTCTTGCCGCC 2014661
Query 81381 ACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATC 81440
||||||| |||||| | || || ||||||| || || | ||| |||||||| || |
Sbjct 2014660 GCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGGATGATGCCGTT 2014601
Query 81441 TGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAG 81500
|| ||||| || || ||| || ||||||| | | | ||| || ||
Sbjct 2014600 GGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCGTGGATGGACAG 2014541
Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560
||||||||| || | |||| || || || ||| || | ||| || || || ||
Sbjct 2014540 ACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGAGGGTATCGTAGATGCC 2014481
Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620
||||||| ||| | |||||| | | | |||||| |||| ||| |||| |
Sbjct 2014480 CTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACAGCTGGGGGCGGGGGGT 2014421
Query 81621 GCCGGCATTGAACAGTGTTGGGGTCGCGTG 81650
|| | ||||| || || |||| ||||||
Sbjct 2014420 ACCCGAGTTGAAGAGCGTGGGGGACGCGTG 2014391
>seq8
Length=1276107
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 455641 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455582
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||||| || || |||||||||||||| || || || ||||||
Sbjct 455581 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 455522
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||| ||||| |||||||||| || || || || ||||| ||
Sbjct 455521 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAAC 455462
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || || | || || ||||||||
Sbjct 455461 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTCCGCGGTGG 455415
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 455869 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455810
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||||| || || |||||||||||||| || || || ||||||
Sbjct 455809 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 455750
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||| ||||| |||||||||| || || || || ||||| ||
Sbjct 455749 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAAC 455690
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || || | || || ||||||||
Sbjct 455689 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTCCGCGGTGG 455643
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 456097 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456038
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||||| || || |||||||||||||| || || || ||||||
Sbjct 456037 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 455978
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||| ||||| |||||||||| || || || || ||||| ||
Sbjct 455977 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAAC 455918
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || || | || || ||||||||
Sbjct 455917 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTCCGCGGTGG 455871
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 456325 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456266
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||||| || || |||||||||||||| || || || ||||||
Sbjct 456265 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 456206
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||| ||||| |||||||| | || || || || ||||| ||
Sbjct 456205 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAAC 456146
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || || | || || ||||||||
Sbjct 456145 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTCCGCGGTGG 456099
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567
|| || || || ||||||||||| || || || ||||| ||||| |||||||| | ||
Sbjct 456451 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGC 456392
Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627
|| || || ||||| || |||| ||||| ||||| || || || || | || || |||
Sbjct 456391 ACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTCCGC 456332
Query 27628 GGTGG 27632
|||||
Sbjct 456331 GGTGG 456327
>seq5
Length=1518631
Score = 145 bits (160), Expect = 9e-30
Identities = 306/452 (68%), Gaps = 6/452 (1%)
Strand=Plus/Plus
Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013
||| ||| ||| || || || ||| | ||||| ||||||| || ||| | ||||||
Sbjct 239812 GATCTCATGCGATCGATCCCTTCCGTCGTCGACGGGTTCAAGCCCTCGCAGAGGAAGGTG 239871
Query 32014 ATATACGCCTGCCTCAAGAAGAACCTGTCGAGT--GACATGAAGGTGGCGCAGCTGTCGG 32071
| | | | ||| ||||| || || | ||| ||||| || || |||||||| ||||
Sbjct 239872 CTCTTCTCGTGCTTCAAGCGTAAGCT--CAAGTCCGACATCAAAGTTGCGCAGCTCTCGG 239929
Query 32072 GCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTG 32131
||||||| | ||||| | || || |||||||||||||| ||| | |||||| |
Sbjct 239930 GCTACGTCTCTGAGCACTCCGCGTACCACCACGGCGAGGCCAGCCTCGCGTCCACCATCG 239989
Query 32132 TCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGAC 32191
|| ||| || || | |||||||| || ||| ||||| | || | ||| || || |
Sbjct 239990 TCGGCCTCGCGCAAGATTTTGTCGGGAGCAACAACGTGAACCTGCTGGTGCCCTCCGGCC 240049
Query 32192 AGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCC 32251
|||| || ||||| || || || ||||| ||| | |||||||||| ||||||
Sbjct 240050 AGTTCGGTACCCGCCTGCAGGGCGGTAAGGACCACGCGTCCCCCCGTTACATTTTCACCA 240109
Query 32252 GTCTCGC-ACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTAC 32310
| ||||| || || | ||| |||||| | || ||||| || | ||| | |||
Sbjct 240110 GGCTCGCGCCCATCTGC-CGCGTCATTTTCCCCGAGTGCGACGACGCCCTCCTCGACTAC 240168
Query 32311 AATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATC 32370
|| ||||| ||| | | || || | | |||| |||| | || || || |
Sbjct 240169 CTCGACGAGGACGGCCAGGTGATTGAACCCGAGCACTACCTTCCGATCCTGCCCCTGGTT 240228
Query 32371 TTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402
|||| ||||| || || |||||||| || ||
Sbjct 240229 CTGGTCAACGGCGCCGACGGCATCGGCACAGG 240260
Score = 118 bits (130), Expect = 1e-21
Identities = 234/343 (68%), Gaps = 4/343 (1%)
Strand=Plus/Plus
Query 31198 ACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGC 31257
|| || ||||| |||||||| ||||||||| || || || ||| || | | |||
Sbjct 239023 ACCGGCATTCCCAAGCTCGATGACGCCAACGACGCGGGCGGCCGCAACTCCGAGCACTGC 239082
Query 31258 ACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTT 31317
|| || || ||||||| ||||||||||| ||||| ||||| | | ||| | ||
Sbjct 239083 ACCCTCATCCTTACCGAAGGTGACTCGGCGAAGGCACTTGCGGTGTCCGGCCTCTCCGTC 239142
Query 31318 GTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGAC 31377
|| || ||| || | ||| || || |||||||| || |||| | ||||||||||||
Sbjct 239143 GTCGGTCGCGATCGATACGGCGTCTTCCCGCTCCGCGGTAAGCTTCTCAACGTTCGTGAC 239202
Query 31378 GCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGG 31437
|| | | ||| | | | | || | ||| || | || | || ||||||||||
Sbjct 239203 GCGAGCCACGATCAGATCATGAACAACGCCGAGATTAACCACATCAAGCAGATCCTCGGC 239262
Query 31438 CTTCAGCATGGCA--AGGTATATAATTCACTGAGAGAATTGCGGTACGGTCGCCTCATGA 31495
|| | || |||| | ||| | | | | |||| | || ||||||| | ||||||
Sbjct 239263 CTCCGCCACGGCACCACGTA-CGAGTCCGCCAAGAG-CCTCCGCTACGGTCACATCATGA 239320
Query 31496 TTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCT 31538
| |||||||| || | ||||||| ||||||||||||||
Sbjct 239321 TCATGACCGATCAGGACCACGACGGCTCCCACATCAAGGGTCT 239363
>seq4
Length=1584431
Score = 141 bits (156), Expect = 1e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||| ||||| || || || ||||| ||||| || | ||| | || | |||||
Sbjct 22570 ACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGCC 22629
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| || || || ||||||||||| || || || || || |||
Sbjct 22630 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAG 22689
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||||| || ||||| || ||||| || |||| ||||| ||||| || ||
Sbjct 22690 CAGCTCGAGGATGGCCGCACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCAC 22749
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| || | ||||| ||||||||
Sbjct 22750 CTCGTGCTCCGTCTCCGCGGTGG 22772
>seq15
Length=739136
Score = 132 bits (146), Expect = 5e-26
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || || ||||| ||||| || | ||| | || | |||||
Sbjct 297874 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAACGTCAAGGCC 297815
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| || || || ||||||||||| || || || || || |||
Sbjct 297814 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGCAAG 297755
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||| | || || || || ||||| || |||| ||||| ||||| || ||
Sbjct 297754 CAGCTCGAGGACGGCCGCACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCAC 297695
Query 27610 CTAGTCTTGCGTCTTCGCGGTGGACA 27635
|| || | ||||| ||||| || ||
Sbjct 297694 CTCGTGCTCCGTCTCCGCGGCGGCCA 297669
>seq6
Length=1431126
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567
|| || || || |||||||||||||| || || || || ||||| |||||||| | ||
Sbjct 1414277 GGCATCCCCCCTGACCAGCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGC 1414336
Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627
||||| || ||||| || |||| ||||| ||||| ||||| || ||| | || || |||
Sbjct 1414337 ACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGCCTCCGC 1414396
Query 27628 GGTGG 27632
|||||
Sbjct 1414397 GGTGG 1414401
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 61048 TCCTCTATAACTCAGCTGGTTAGAGTGTCAGGCTGTTAACCTGAAAGTCGCAGGTTCGAT 61107
||||||||| ||||| |||| |||| || ||||||||||| || |||| |||||||||
Sbjct 1006613 TCCTCTATAGCTCAGTTGGT-AGAGCGTGCGGCTGTTAACCGCAAGGTCGTAGGTTCGAT 1006555
Query 61108 CCCTGCTGGAGGAG 61121
||||||||||||||
Sbjct 1006554 CCCTGCTGGAGGAG 1006541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310264551280
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