Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 215 6e-51 seq8 167 3e-36 seq5 145 9e-30 seq4 141 1e-28 seq15 132 5e-26 seq6 100 3e-16 >seq1 Length=2053059 Score = 215 bits (238), Expect = 6e-51 Identities = 501/750 (67%), Gaps = 9/750 (1%) Strand=Plus/Minus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 |||||| || |||||||| || ||| || | || ||||||| || || ||||| Sbjct 2015137 GGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGGTGTACTCGACAATCTCGGTGCA 2015078 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 | || || || || || || ||||| | |||||| |||||| |||||| || || Sbjct 2015077 GAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGCACGCATC 2015018 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 |||| || |||||||||| |||| ||||| ||||| |||| |||||||||| ||| | Sbjct 2015017 CTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATGGCGAACCAGAG 2014958 Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146 || | ||||||||| ||| ||||| || ||| | ||||| |||| | Sbjct 2014957 CTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGTACTTTTCGTACAGAGC 2014898 Query 81147 GTCGAACT--TGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 ||||||| | || || || || | ||| | ||| ||||| ||||| | ||| Sbjct 2014897 CTCGAACTCCTCGCCCCAGCAA--TCCGCGAGACCCGGGGCTTCGTTGGGGCAGAAGAGG 2014840 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 ||| ||| || ||| || ||||||||| || | |||| ||| || | Sbjct 2014839 GTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTGGTCCACAGGCCGTAG 2014780 Query 81265 AACAGGTCGC-GGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323 |||||||| | |||| ||||||||||| | || ||||| ||| | ||||| |||| Sbjct 2014779 AACAGGTCCCTGGCA-CGCGCCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGCCAGTC 2014721 Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGC---GACGGCC 81380 | ||||||||| ||||| ||||| || || | ||||| | || || | | ||| Sbjct 2014720 GAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCTTTCCTCTTGCCGCC 2014661 Query 81381 ACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATC 81440 ||||||| |||||| | || || ||||||| || || | ||| |||||||| || | Sbjct 2014660 GCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGGATGATGCCGTT 2014601 Query 81441 TGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAG 81500 || ||||| || || ||| || ||||||| | | | ||| || || Sbjct 2014600 GGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCGTGGATGGACAG 2014541 Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560 ||||||||| || | |||| || || || ||| || | ||| || || || || Sbjct 2014540 ACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGAGGGTATCGTAGATGCC 2014481 Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620 ||||||| ||| | |||||| | | | |||||| |||| ||| |||| | Sbjct 2014480 CTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACAGCTGGGGGCGGGGGGT 2014421 Query 81621 GCCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 || | ||||| || || |||| |||||| Sbjct 2014420 ACCCGAGTTGAAGAGCGTGGGGGACGCGTG 2014391 >seq8 Length=1276107 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 455641 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455582 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 455581 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 455522 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| |||||||||| || || || || ||||| || Sbjct 455521 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAAC 455462 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || | || || |||||||| Sbjct 455461 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTCCGCGGTGG 455415 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 455869 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455810 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 455809 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 455750 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| |||||||||| || || || || ||||| || Sbjct 455749 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAAC 455690 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || | || || |||||||| Sbjct 455689 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTCCGCGGTGG 455643 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 456097 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456038 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 456037 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 455978 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| |||||||||| || || || || ||||| || Sbjct 455977 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAAC 455918 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || | || || |||||||| Sbjct 455917 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTCCGCGGTGG 455871 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 456325 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456266 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 456265 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 456206 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| |||||||| | || || || || ||||| || Sbjct 456205 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAAC 456146 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || | || || |||||||| Sbjct 456145 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTCCGCGGTGG 456099 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || || ||||| ||||| |||||||| | || Sbjct 456451 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGC 456392 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || |||| ||||| ||||| || || || || | || || ||| Sbjct 456391 ACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTCCGC 456332 Query 27628 GGTGG 27632 ||||| Sbjct 456331 GGTGG 456327 >seq5 Length=1518631 Score = 145 bits (160), Expect = 9e-30 Identities = 306/452 (68%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013 ||| ||| ||| || || || ||| | ||||| ||||||| || ||| | |||||| Sbjct 239812 GATCTCATGCGATCGATCCCTTCCGTCGTCGACGGGTTCAAGCCCTCGCAGAGGAAGGTG 239871 Query 32014 ATATACGCCTGCCTCAAGAAGAACCTGTCGAGT--GACATGAAGGTGGCGCAGCTGTCGG 32071 | | | | ||| ||||| || || | ||| ||||| || || |||||||| |||| Sbjct 239872 CTCTTCTCGTGCTTCAAGCGTAAGCT--CAAGTCCGACATCAAAGTTGCGCAGCTCTCGG 239929 Query 32072 GCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTG 32131 ||||||| | ||||| | || || |||||||||||||| ||| | |||||| | Sbjct 239930 GCTACGTCTCTGAGCACTCCGCGTACCACCACGGCGAGGCCAGCCTCGCGTCCACCATCG 239989 Query 32132 TCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGAC 32191 || ||| || || | |||||||| || ||| ||||| | || | ||| || || | Sbjct 239990 TCGGCCTCGCGCAAGATTTTGTCGGGAGCAACAACGTGAACCTGCTGGTGCCCTCCGGCC 240049 Query 32192 AGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCC 32251 |||| || ||||| || || || ||||| ||| | |||||||||| |||||| Sbjct 240050 AGTTCGGTACCCGCCTGCAGGGCGGTAAGGACCACGCGTCCCCCCGTTACATTTTCACCA 240109 Query 32252 GTCTCGC-ACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTAC 32310 | ||||| || || | ||| |||||| | || ||||| || | ||| | ||| Sbjct 240110 GGCTCGCGCCCATCTGC-CGCGTCATTTTCCCCGAGTGCGACGACGCCCTCCTCGACTAC 240168 Query 32311 AATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATC 32370 || ||||| ||| | | || || | | |||| |||| | || || || | Sbjct 240169 CTCGACGAGGACGGCCAGGTGATTGAACCCGAGCACTACCTTCCGATCCTGCCCCTGGTT 240228 Query 32371 TTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 |||| ||||| || || |||||||| || || Sbjct 240229 CTGGTCAACGGCGCCGACGGCATCGGCACAGG 240260 Score = 118 bits (130), Expect = 1e-21 Identities = 234/343 (68%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 31198 ACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGC 31257 || || ||||| |||||||| ||||||||| || || || ||| || | | ||| Sbjct 239023 ACCGGCATTCCCAAGCTCGATGACGCCAACGACGCGGGCGGCCGCAACTCCGAGCACTGC 239082 Query 31258 ACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTT 31317 || || || ||||||| ||||||||||| ||||| ||||| | | ||| | || Sbjct 239083 ACCCTCATCCTTACCGAAGGTGACTCGGCGAAGGCACTTGCGGTGTCCGGCCTCTCCGTC 239142 Query 31318 GTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGAC 31377 || || ||| || | ||| || || |||||||| || |||| | |||||||||||| Sbjct 239143 GTCGGTCGCGATCGATACGGCGTCTTCCCGCTCCGCGGTAAGCTTCTCAACGTTCGTGAC 239202 Query 31378 GCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGG 31437 || | | ||| | | | | || | ||| || | || | || |||||||||| Sbjct 239203 GCGAGCCACGATCAGATCATGAACAACGCCGAGATTAACCACATCAAGCAGATCCTCGGC 239262 Query 31438 CTTCAGCATGGCA--AGGTATATAATTCACTGAGAGAATTGCGGTACGGTCGCCTCATGA 31495 || | || |||| | ||| | | | | |||| | || ||||||| | |||||| Sbjct 239263 CTCCGCCACGGCACCACGTA-CGAGTCCGCCAAGAG-CCTCCGCTACGGTCACATCATGA 239320 Query 31496 TTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCT 31538 | |||||||| || | ||||||| |||||||||||||| Sbjct 239321 TCATGACCGATCAGGACCACGACGGCTCCCACATCAAGGGTCT 239363 >seq4 Length=1584431 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || || ||||| ||||| || | ||| | || | ||||| Sbjct 22570 ACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGCC 22629 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || ||||||||||| || || || || || ||| Sbjct 22630 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAG 22689 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || ||||| || ||||| || |||| ||||| ||||| || || Sbjct 22690 CAGCTCGAGGATGGCCGCACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCAC 22749 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | ||||| |||||||| Sbjct 22750 CTCGTGCTCCGTCTCCGCGGTGG 22772 >seq15 Length=739136 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||| ||||| || | ||| | || | ||||| Sbjct 297874 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAACGTCAAGGCC 297815 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || ||||||||||| || || || || || ||| Sbjct 297814 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGCAAG 297755 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || || || || ||||| || |||| ||||| ||||| || || Sbjct 297754 CAGCTCGAGGACGGCCGCACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCAC 297695 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGACA 27635 || || | ||||| ||||| || || Sbjct 297694 CTCGTGCTCCGTCTCCGCGGCGGCCA 297669 >seq6 Length=1431126 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || |||||||||||||| || || || || ||||| |||||||| | || Sbjct 1414277 GGCATCCCCCCTGACCAGCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGC 1414336 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| ||||| || ||| | || || ||| Sbjct 1414337 ACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGCCTCCGC 1414396 Query 27628 GGTGG 27632 ||||| Sbjct 1414397 GGTGG 1414401 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 61048 TCCTCTATAACTCAGCTGGTTAGAGTGTCAGGCTGTTAACCTGAAAGTCGCAGGTTCGAT 61107 ||||||||| ||||| |||| |||| || ||||||||||| || |||| ||||||||| Sbjct 1006613 TCCTCTATAGCTCAGTTGGT-AGAGCGTGCGGCTGTTAACCGCAAGGTCGTAGGTTCGAT 1006555 Query 61108 CCCTGCTGGAGGAG 61121 |||||||||||||| Sbjct 1006554 CCCTGCTGGAGGAG 1006541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310264551280