Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq19 762 0.0 >seq19 Length=72585 Score = 762 bits (844), Expect = 0.0 Identities = 746/960 (78%), Gaps = 4/960 (0%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTT 176206 ||||| | |||||||| || || | ||||| || | | || || || | || | Sbjct 10209 TTTACATCGGTTGGTTCGGAGTATTAATGATCCCTACTTTACTTACAGCAACTTCAGTAT 10268 Query 176207 TTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAG 176266 | ||||| ||||||||||| || || ||||| |||||||| ||||| || || |||||| Sbjct 10269 TCATCGTAGCATTTATTGCTGCTCCTCCTGTAGATATCGATGGTATCCGTGAGCCAGTAT 10328 Query 176267 CAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACG 176326 | ||||| || | || ||||||||||||||||| || || || |||| | || |||| Sbjct 10329 CTGGATCACTTATGTACGGAAACAACATCATCTCTGGTGCTGTAATCCCTACATCTAACG 10388 Query 176327 CAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 176386 | |||||||| |||||||||||||||||||||||||| | |||| || ||||| |||| Sbjct 10389 CTATCGGACTTCACTTCTACCCAATCTGGGAAGCAGCTTCTCTTGATGAGTGGCTTTACA 10448 Query 176387 ATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGG 176446 | || || || ||||| || | |||| |||||| | ||||| || | | ||||||| Sbjct 10449 ACGGTGGTCCTTACCAGCTTATCGTATGTCACTTCTTCATCGGAATTTGTTCATACATGG 10508 Query 176447 GACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506 | || | ||||| ||| || | | |||| |||||||||||||| ||| || |||| Sbjct 10509 GTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATGCGTCCTTGGATTGCTGTAGCTTACT 10568 Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566 |||| || ||| | ||||| | || || ||| |||| || ||| ||||||| || |||| Sbjct 10569 CTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATCGTATACCCAATCGGTCAGGGTTCTT 10628 Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626 |||||||||| ||||||||||| ||||| || || |||||||| ||| | |||||||| | Sbjct 10629 TCTCTGATGGAATGCCTCTTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGG 10688 Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686 | ||||||||||| || |||||||||||||| |||||||| || || ||||| || |||| Sbjct 10689 CTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTG 10748 Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746 | || |||||||| ||||||||||| || || ||||| || || | | ||||| | Sbjct 10749 GTTCACTTTTCTCTGCAATGCACGGTTCACTCGTAACTTCATCTCTCATCCGTGAGACTA 10808 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | || ||||| || |||| || ||||| |||||||||||||||||||| ||||||| Sbjct 10809 CTGAGAACGAGTCTGCAAACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACA 10868 Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 | |||||||||||||||||||| || |||||||||||||| || ||||| ||||| |||| Sbjct 10869 TCGTAGCTGCACACGGTTACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACT 10928 Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926 || | || ||||||||||| ||| | ||||| | | |||||||| || || | Sbjct 10929 CACGTTCACTCCACTTCTTCCTCGCAATCTGGCCAGTAATGGGAATCTGGTTCACAGCTA 10988 Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986 ||||| ||| || ||||| |||||||||||||| |||||||||||||||||||| ||| Sbjct 10989 TGGGTATTTCAACTATGGCTTTCAACCTTAACGGATTCAACTTCAACCAGTCTGTAGTAG 11048 Query 176987 A--CAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGG 177044 | ||| || || ||| ||||||| |||||| | |||||||| ||||| || Sbjct 11049 ATTCAA--ACGGACGTGTAATTAACACATGGGCTGATATCGTAAACCGTGCTAACCTCGG 11106 Query 177045 TATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCAGA 177104 ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||| Sbjct 11107 TATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCACTTGACCTTGCATCTGTAGA 11166 Score = 762 bits (844), Expect = 0.0 Identities = 746/960 (78%), Gaps = 4/960 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTT 176206 ||||| | |||||||| || || | ||||| || | | || || || | || | Sbjct 36934 TTTACATCGGTTGGTTCGGAGTATTAATGATCCCTACTTTACTTACAGCAACTTCAGTAT 36875 Query 176207 TTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAG 176266 | ||||| ||||||||||| || || ||||| |||||||| ||||| || || |||||| Sbjct 36874 TCATCGTAGCATTTATTGCTGCTCCTCCTGTAGATATCGATGGTATCCGTGAGCCAGTAT 36815 Query 176267 CAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACG 176326 | ||||| || | || ||||||||||||||||| || || || |||| | || |||| Sbjct 36814 CTGGATCACTTATGTACGGAAACAACATCATCTCTGGTGCTGTAATCCCTACATCTAACG 36755 Query 176327 CAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 176386 | |||||||| |||||||||||||||||||||||||| | |||| || ||||| |||| Sbjct 36754 CTATCGGACTTCACTTCTACCCAATCTGGGAAGCAGCTTCTCTTGATGAGTGGCTTTACA 36695 Query 176387 ATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGG 176446 | || || || ||||| || | |||| |||||| | ||||| || | | ||||||| Sbjct 36694 ACGGTGGTCCTTACCAGCTTATCGTATGTCACTTCTTCATCGGAATTTGTTCATACATGG 36635 Query 176447 GACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506 | || | ||||| ||| || | | |||| |||||||||||||| ||| || |||| Sbjct 36634 GTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATGCGTCCTTGGATTGCTGTAGCTTACT 36575 Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566 |||| || ||| | ||||| | || || ||| |||| || ||| ||||||| || |||| Sbjct 36574 CTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATCGTATACCCAATCGGTCAGGGTTCTT 36515 Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626 |||||||||| ||||||||||| ||||| || || |||||||| ||| | |||||||| | Sbjct 36514 TCTCTGATGGAATGCCTCTTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGG 36455 Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686 | ||||||||||| || |||||||||||||| |||||||| || || ||||| || |||| Sbjct 36454 CTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTG 36395 Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746 | || |||||||| ||||||||||| || || ||||| || || | | ||||| | Sbjct 36394 GTTCACTTTTCTCTGCAATGCACGGTTCACTCGTAACTTCATCTCTCATCCGTGAGACTA 36335 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | || ||||| || |||| || ||||| |||||||||||||||||||| ||||||| Sbjct 36334 CTGAGAACGAGTCTGCAAACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACA 36275 Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 | |||||||||||||||||||| || |||||||||||||| || ||||| ||||| |||| Sbjct 36274 TCGTAGCTGCACACGGTTACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACT 36215 Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926 || | || ||||||||||| ||| | ||||| | | |||||||| || || | Sbjct 36214 CACGTTCACTCCACTTCTTCCTCGCAATCTGGCCAGTAATGGGAATCTGGTTCACAGCTA 36155 Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986 ||||| ||| || ||||| |||||||||||||| |||||||||||||||||||| ||| Sbjct 36154 TGGGTATTTCAACTATGGCTTTCAACCTTAACGGATTCAACTTCAACCAGTCTGTAGTAG 36095 Query 176987 A--CAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGG 177044 | ||| || || ||| ||||||| |||||| | |||||||| ||||| || Sbjct 36094 ATTCAA--ACGGACGTGTAATTAACACATGGGCTGATATCGTAAACCGTGCTAACCTCGG 36037 Query 177045 TATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCAGA 177104 ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||| Sbjct 36036 TATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCACTTGACCTTGCATCTGTAGA 35977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603494256670080