Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq5 242 3e-59
>seq5
Length=1518631
Score = 242 bits (268), Expect = 3e-59
Identities = 415/599 (69%), Gaps = 10/599 (2%)
Strand=Plus/Plus
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
|| || || | |||| | |||||||| | ||| || || |||||||| ||||| || |
Sbjct 815419 ACCTGCGCCACCATGCAGGTGAGCAGGGAGTAGCTCGCGATGTTGAAGGGCACACCGAGG 815478
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736
|||||||| | ||| | || || | |||||| || | ||| || || |||||||| ||
Sbjct 815479 CCCATGTCGCACGACCTCTGGTACATCTGGCACGATAACTCACCGTTTGCGACGTAAAAC 815538
Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796
||||||| ||||||||||||| || |||||| ||| || ||||||||||||
Sbjct 815539 TGGCAGAACATGTGGCACGGGGGCAGGGCCATCTCCTTGAGCGCCGCGGGGTTCCACGCG 815598
Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGC 6856
| || ||| | ||||| | ||||| ||| | |||||||||| | | |||
Sbjct 815599 GTGAGCAGGATACGCCTGTCGTTGGGGTTGTTCTTGATCTTGTCGATCACCTCCGCGAGC 815658
Query 6857 TGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGT 6916
|||||| ||||||| || | |||||| || | | || ||||| || || |||||
Sbjct 815659 TGGTCCACTCCCTGACCGGTATAGTCGGCGTGCATGTCCTTGTACTCGGCGCCGAAGTGG 815718
Query 6917 CTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC---CC 6973
| ||||||||| ||||| ||||| || | ||| |||||||||| || || || ||
Sbjct 815719 CGCCACTGGAAGCCGTACACCGGCCCGAGGTCACCCTCCTCCC----TGTGACCCAGGCC 815774
Query 6974 --CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACG 7031
||| |||| || | || || |||| | ||||||| || | | || | |
Sbjct 815775 GACGC-TGTCGAGGTACTCGCGGCTTCCGTTACCGTCCCAAATGTGAATGTCCTTGTCCT 815833
Query 7032 AGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCT 7091
||| ||||||| | | ||| ||| | |||||||| | |||||||| | ||||||
Sbjct 815834 GGAGTTCCTTGGCGCTGGTGCAGCCCTTGACGAACCAGATGAGCTCCTCCGCGACGCCCC 815893
Query 7092 TCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCT 7151
||||| | ||||| || || || |||||||| || || ||||||| | | || |
Sbjct 815894 TCCAGAAGACACGCTTGGTGGTGAGCAGCGGGAAGCTGCGGCGAAGGTCGAAACGCATTT 815953
Query 7152 GTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCCCTCC 7210
| ||| ||| | | || ||||| ||||| ||||| |||||| || |||||||
Sbjct 815954 GGCAGCCAAACTTGCTAATCGTGCCCGTTCCGGTGCGGTCACCCTTCACGTTGCCCTCC 816012
Score = 242 bits (268), Expect = 3e-59
Identities = 415/599 (69%), Gaps = 10/599 (2%)
Strand=Plus/Minus
Query 34135 GGAGGGCTACCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACA 34194
||||||| || |||||| ||||| ||||| ||||| || | | ||| ||| ||
Sbjct 816012 GGAGGGCAACGTGAAGGGTGACCGCACCGGAACGGGCACGATTAGCAAGTTTGGCTGCCA 815953
Query 34195 GGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAA 34254
|| | | ||||||| || || |||||||| || || || ||||| | |||||
Sbjct 815952 AATGCGTTTCGACCTTCGCCGCAGCTTCCCGCTGCTCACCACCAAGCGTGTCTTCTGGAG 815893
Query 34255 GGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTC 34314
|||||| | |||||||| | |||||||| | ||| ||| | | ||||||| |||
Sbjct 815892 GGGCGTCGCGGAGGAGCTCATCTGGTTCGTCAAGGGCTGCACCAGCGCCAAGGAACTCCA 815833
Query 34315 GTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCG--G 34372
| | || | | || ||||||| | |||| || || | || |||| ||| |
Sbjct 815832 GGACAAGGACATTCACATTTGGGACGGTAACGGAAGCCGCGAGTACCTCGACA-GCGTCG 815774
Query 34373 G---GGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGA 34429
| || || || |||||||||| ||| | || ||||| ||||| ||||||||| |
Sbjct 815773 GCCTGGGTCACA----GGGAGGAGGGTGACCTCGGGCCGGTGTACGGCTTCCAGTGGCGC 815718
Query 34430 CACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAG 34489
||||| || || ||||| || | | || |||||| | || ||||||| |||||||
Sbjct 815717 CACTTCGGCGCCGAGTACAAGGACATGCACGCCGACTATACCGGTCAGGGAGTGGACCAG 815658
Query 34490 CTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGC 34549
|| | | |||||||||| | ||| ||||| | ||||| | ||| || | |
Sbjct 815657 CTCGCGGAGGTGATCGACAAGATCAAGAACAACCCCAACGACAGGCGTATCCTGCTCACC 815598
Query 34550 GCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAA 34609
||||||||||| || ||| |||||| || ||||||||||||| |||||||
Sbjct 815597 GCGTGGAACCCCGCGGCGCTCAAGGAGATGGCCCTGCCCCCGTGCCACATGTTCTGCCAG 815538
Query 34610 TTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGG 34669
|| |||||||| || || ||| | || |||||| | || || | ||| | ||||||||
Sbjct 815537 TTTTACGTCGCAAACGGTGAGTTATCGTGCCAGATGTACCAGAGGTCGTGCGACATGGGC 815478
Query 34670 TTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728
| || ||||| |||||||| || || ||| | |||||||| | |||| | || || ||
Sbjct 815477 CTCGGTGTGCCCTTCAACATCGCGAGCTACTCCCTGCTCACCTGCATGGTGGCGCAGGT 815419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448262293537680
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