Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq8 140 8e-28
seq18 131 4e-25
seq15 123 6e-23
seq4 123 6e-23
seq19 87.8 4e-12
>seq8
Length=1276107
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| ||||||||||| ||||| || || |||| ||||| || || | ||| | |||||
Sbjct 455430 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCC 455489
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || ||||| || || || || ||||||||
Sbjct 455490 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 455549
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | || || || | ||||| |||
Sbjct 455550 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 455609
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | ||| || | ||| | |||||
Sbjct 455610 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455641
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| ||||||||||| ||||| || || |||| ||||| || || | ||| | |||||
Sbjct 455658 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCC 455717
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || ||||| || || || || ||||||||
Sbjct 455718 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 455777
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | || || || | ||||| |||
Sbjct 455778 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 455837
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | ||| || | ||| | |||||
Sbjct 455838 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455869
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| ||||||||||| ||||| || || |||| ||||| || || | ||| | |||||
Sbjct 455886 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCC 455945
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || ||||| || || || || ||||||||
Sbjct 455946 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 456005
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | || || || | ||||| |||
Sbjct 456006 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 456065
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | ||| || | ||| | |||||
Sbjct 456066 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456097
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| ||||||||||| ||||| || || |||| ||||| || || | ||| | || ||
Sbjct 456114 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCC 456173
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || ||||| || || || || ||||||||
Sbjct 456174 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 456233
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | || || || | ||||| |||
Sbjct 456234 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 456293
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | ||| || | ||| | |||||
Sbjct 456294 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456325
Score = 84.2 bits (92), Expect = 5e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| ||||||||||| ||||| || || |||| ||||| || || | ||| | || ||
Sbjct 456342 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCC 456401
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
|| |||||||| ||||||||||| || || || ||||| || || || |||
Sbjct 456402 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 456452
>seq18
Length=47425
Score = 131 bits (144), Expect = 4e-25
Identities = 205/291 (70%), Gaps = 2/291 (1%)
Strand=Plus/Plus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTT-TCTATGAT 7499
|| |||||| | || ||||||| |||||||| || |||| | || ||| || | |
Sbjct 2578 ACATTATATCTTATTTTTGGTGCTTTTTCTGGAGTTTTAGGATC-ATGTTTCTCCCTTTT 2636
Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559
|| | | |||||||| || || |||||| || | || ||| ||| | ||
Sbjct 2637 AATTCGTATGGAATTAGCACAACCTGGAAATCAAATTTTAGGAGGAAATCATCAATTATA 2696
Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619
|| || | ||||| || ||||| || |||||||||||||| | || ||||| | | |
Sbjct 2697 TAATGTGTTAATTACAGCACATGCATTCCTTATGATTTTCTTTATGGTAATGCCCGCTCT 2756
Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679
|| || || | || ||||| || || || | ||||||||||| ||||||||||| ||
Sbjct 2757 TATTGGTGGATATGGTAATTGGTTTGTACCAATTATGATTGGTGCACCTGATATGGCATT 2816
Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730
||| | | |||||||| ||||| || |||| || ||||| ||||| ||
Sbjct 2817 CCCACGTTTAAACAATATTAGTTTCTGGCTACTCCCTCCTTCATTATTACT 2867
Score = 131 bits (144), Expect = 4e-25
Identities = 205/291 (70%), Gaps = 2/291 (1%)
Strand=Plus/Minus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTT-TCTATGAT 7499
|| |||||| | || ||||||| |||||||| || |||| | || ||| || | |
Sbjct 33728 ACATTATATCTTATTTTTGGTGCTTTTTCTGGAGTTTTAGGATC-ATGTTTCTCCCTTTT 33670
Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559
|| | | |||||||| || || |||||| || | || ||| ||| | ||
Sbjct 33669 AATTCGTATGGAATTAGCACAACCTGGAAATCAAATTTTAGGAGGAAATCATCAATTATA 33610
Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619
|| || | ||||| || ||||| || |||||||||||||| | || ||||| | | |
Sbjct 33609 TAATGTGTTAATTACAGCACATGCATTCCTTATGATTTTCTTTATGGTAATGCCCGCTCT 33550
Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679
|| || || | || ||||| || || || | ||||||||||| ||||||||||| ||
Sbjct 33549 TATTGGTGGATATGGTAATTGGTTTGTACCAATTATGATTGGTGCACCTGATATGGCATT 33490
Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730
||| | | |||||||| ||||| || |||| || ||||| ||||| ||
Sbjct 33489 CCCACGTTTAAACAATATTAGTTTCTGGCTACTCCCTCCTTCATTATTACT 33439
Score = 105 bits (116), Expect = 2e-17
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424
||||||||| ||||| |||| |||||| | | ||||||||| || || ||||||||
Sbjct 3083 AATGGTAATCGGTGCATTAATAATCCAGGTCCACGCATATTAAAGATGGTTGTAATAAAA 3024
Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484
|| || || |||| | | | | ||||| || ||||||||||| || ||||||||
Sbjct 3023 TTGATTGCTCCTAAGATACTACTTGCACCTGAAACGTGTAAACTAAAGATAGCTAAATCT 2964
Query 371485 ACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGTT 371544
|| | ||| || |||||| | |||| ||| | || || |||||||| || || |||
Sbjct 2963 ACAGCACCTCCTGAGTGACTTGTAATATGACTCAGTGGGGGATAAACTGTCCATCCAGTT 2904
Query 371545 C 371545
|
Sbjct 2903 C 2903
Score = 105 bits (116), Expect = 2e-17
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424
||||||||| ||||| |||| |||||| | | ||||||||| || || ||||||||
Sbjct 33223 AATGGTAATCGGTGCATTAATAATCCAGGTCCACGCATATTAAAGATGGTTGTAATAAAA 33282
Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484
|| || || |||| | | | | ||||| || ||||||||||| || ||||||||
Sbjct 33283 TTGATTGCTCCTAAGATACTACTTGCACCTGAAACGTGTAAACTAAAGATAGCTAAATCT 33342
Query 371485 ACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGTT 371544
|| | ||| || |||||| | |||| ||| | || || |||||||| || || |||
Sbjct 33343 ACAGCACCTCCTGAGTGACTTGTAATATGACTCAGTGGGGGATAAACTGTCCATCCAGTT 33402
Query 371545 C 371545
|
Sbjct 33403 C 33403
Score = 102 bits (112), Expect = 2e-16
Identities = 106/138 (77%), Gaps = 1/138 (1%)
Strand=Plus/Minus
Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783
|||| | ||| |||||||| |||| ||||| | || ||||||||||||| |||||||||
Sbjct 5360 TATTGCAAGGATTGGTAAGGTTCTGCGCGTTGTTTCGAATTAAACCACATGCTCCACCGC 5301
Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843
|| | || | |||||| || |||| | ||||| |||||||| |||||| | ||| |
Sbjct 5300 TTGTGTAAGCCCCCGTCAATTCCTTTAAATTTTAGCCTTGCGGCCGTAGTCTTTAGGCTG 5241
Query 7844 AATATTT-ACGCGTTAGC 7860
|||| | ||||||||
Sbjct 5240 CTGATTTCATGCGTTAGC 5223
Score = 102 bits (112), Expect = 2e-16
Identities = 106/138 (77%), Gaps = 1/138 (1%)
Strand=Plus/Plus
Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783
|||| | ||| |||||||| |||| ||||| | || ||||||||||||| |||||||||
Sbjct 30946 TATTGCAAGGATTGGTAAGGTTCTGCGCGTTGTTTCGAATTAAACCACATGCTCCACCGC 31005
Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843
|| | || | |||||| || |||| | ||||| |||||||| |||||| | ||| |
Sbjct 31006 TTGTGTAAGCCCCCGTCAATTCCTTTAAATTTTAGCCTTGCGGCCGTAGTCTTTAGGCTG 31065
Query 7844 AATATTT-ACGCGTTAGC 7860
|||| | ||||||||
Sbjct 31066 CTGATTTCATGCGTTAGC 31083
>seq15
Length=739136
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||| ||||| || || |||| ||||| || || | ||| | || ||
Sbjct 297687 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCC 297746
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| || || || ||||| || || || || ||||||||
Sbjct 297747 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 297806
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | ||||| || | ||||| |||
Sbjct 297807 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTC 297866
Query 225682 TTGCCCGT 225689
||||| ||
Sbjct 297867 TTGCCGGT 297874
>seq4
Length=1584431
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||| ||||| || || |||| ||||| || || | || | |||||
Sbjct 22757 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCATCC 22698
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| || || || |||||||| || || || ||||||||
Sbjct 22697 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 22638
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | ||||| || | ||||| |||
Sbjct 22637 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 22578
Query 225682 TTGCCCGT 225689
|| || ||
Sbjct 22577 TTACCGGT 22570
>seq19
Length=72585
Score = 87.8 bits (96), Expect = 4e-12
Identities = 97/128 (76%), Gaps = 1/128 (1%)
Strand=Plus/Minus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| ||||| | ||| ||| ||||||||||||||||||||||||| | |
Sbjct 5931 TGGTAAGGTTCTTCGTGTTGCATCGAATTAAACCACATACTCCACCGCTTGTGCGGGTCC 5872
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGG-TGGAATATTTACGC 7854
|||||| || |||||||||| | |||| |||| | | |||| |||| || ||||
Sbjct 5871 CCGTCAATTCCTTTGAGTTTCACTTTTGCAAGCGTAATCCCCAGGCGGGAAACTTCACGC 5812
Query 7855 GTTAGCTT 7862
||||||||
Sbjct 5811 GTTAGCTT 5804
Score = 87.8 bits (96), Expect = 4e-12
Identities = 97/128 (76%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| ||||| | ||| ||| ||||||||||||||||||||||||| | |
Sbjct 41212 TGGTAAGGTTCTTCGTGTTGCATCGAATTAAACCACATACTCCACCGCTTGTGCGGGTCC 41271
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGG-TGGAATATTTACGC 7854
|||||| || |||||||||| | |||| |||| | | |||| |||| || ||||
Sbjct 41272 CCGTCAATTCCTTTGAGTTTCACTTTTGCAAGCGTAATCCCCAGGCGGGAAACTTCACGC 41331
Query 7855 GTTAGCTT 7862
||||||||
Sbjct 41332 GTTAGCTT 41339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530909693186
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