Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq8 140 8e-28 seq18 131 4e-25 seq15 123 6e-23 seq4 123 6e-23 seq19 87.8 4e-12 >seq8 Length=1276107 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||| || || |||| ||||| || || | ||| | ||||| Sbjct 455430 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCC 455489 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || || || |||||||| Sbjct 455490 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 455549 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | || || || | ||||| ||| Sbjct 455550 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 455609 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | ||||| Sbjct 455610 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455641 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||| || || |||| ||||| || || | ||| | ||||| Sbjct 455658 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCC 455717 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || || || |||||||| Sbjct 455718 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 455777 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | || || || | ||||| ||| Sbjct 455778 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 455837 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | ||||| Sbjct 455838 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455869 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||| || || |||| ||||| || || | ||| | ||||| Sbjct 455886 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCC 455945 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || || || |||||||| Sbjct 455946 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 456005 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | || || || | ||||| ||| Sbjct 456006 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 456065 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | ||||| Sbjct 456066 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456097 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||| || || |||| ||||| || || | ||| | || || Sbjct 456114 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCC 456173 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || || || |||||||| Sbjct 456174 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 456233 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | || || || | ||||| ||| Sbjct 456234 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 456293 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | ||||| Sbjct 456294 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456325 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||| || || |||| ||||| || || | ||| | || || Sbjct 456342 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCC 456401 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| ||||||||||| || || || ||||| || || || ||| Sbjct 456402 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 456452 >seq18 Length=47425 Score = 131 bits (144), Expect = 4e-25 Identities = 205/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTT-TCTATGAT 7499 || |||||| | || ||||||| |||||||| || |||| | || ||| || | | Sbjct 2578 ACATTATATCTTATTTTTGGTGCTTTTTCTGGAGTTTTAGGATC-ATGTTTCTCCCTTTT 2636 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||||| || || |||||| || | || ||| ||| | || Sbjct 2637 AATTCGTATGGAATTAGCACAACCTGGAAATCAAATTTTAGGAGGAAATCATCAATTATA 2696 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || | ||||| || ||||| || |||||||||||||| | || ||||| | | | Sbjct 2697 TAATGTGTTAATTACAGCACATGCATTCCTTATGATTTTCTTTATGGTAATGCCCGCTCT 2756 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || || | || ||||| || || || | ||||||||||| ||||||||||| || Sbjct 2757 TATTGGTGGATATGGTAATTGGTTTGTACCAATTATGATTGGTGCACCTGATATGGCATT 2816 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 ||| | | |||||||| ||||| || |||| || ||||| ||||| || Sbjct 2817 CCCACGTTTAAACAATATTAGTTTCTGGCTACTCCCTCCTTCATTATTACT 2867 Score = 131 bits (144), Expect = 4e-25 Identities = 205/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTT-TCTATGAT 7499 || |||||| | || ||||||| |||||||| || |||| | || ||| || | | Sbjct 33728 ACATTATATCTTATTTTTGGTGCTTTTTCTGGAGTTTTAGGATC-ATGTTTCTCCCTTTT 33670 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||||| || || |||||| || | || ||| ||| | || Sbjct 33669 AATTCGTATGGAATTAGCACAACCTGGAAATCAAATTTTAGGAGGAAATCATCAATTATA 33610 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || | ||||| || ||||| || |||||||||||||| | || ||||| | | | Sbjct 33609 TAATGTGTTAATTACAGCACATGCATTCCTTATGATTTTCTTTATGGTAATGCCCGCTCT 33550 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || || | || ||||| || || || | ||||||||||| ||||||||||| || Sbjct 33549 TATTGGTGGATATGGTAATTGGTTTGTACCAATTATGATTGGTGCACCTGATATGGCATT 33490 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 ||| | | |||||||| ||||| || |||| || ||||| ||||| || Sbjct 33489 CCCACGTTTAAACAATATTAGTTTCTGGCTACTCCCTCCTTCATTATTACT 33439 Score = 105 bits (116), Expect = 2e-17 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 ||||||||| ||||| |||| |||||| | | ||||||||| || || |||||||| Sbjct 3083 AATGGTAATCGGTGCATTAATAATCCAGGTCCACGCATATTAAAGATGGTTGTAATAAAA 3024 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| | | | | ||||| || ||||||||||| || |||||||| Sbjct 3023 TTGATTGCTCCTAAGATACTACTTGCACCTGAAACGTGTAAACTAAAGATAGCTAAATCT 2964 Query 371485 ACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGTT 371544 || | ||| || |||||| | |||| ||| | || || |||||||| || || ||| Sbjct 2963 ACAGCACCTCCTGAGTGACTTGTAATATGACTCAGTGGGGGATAAACTGTCCATCCAGTT 2904 Query 371545 C 371545 | Sbjct 2903 C 2903 Score = 105 bits (116), Expect = 2e-17 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 ||||||||| ||||| |||| |||||| | | ||||||||| || || |||||||| Sbjct 33223 AATGGTAATCGGTGCATTAATAATCCAGGTCCACGCATATTAAAGATGGTTGTAATAAAA 33282 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| | | | | ||||| || ||||||||||| || |||||||| Sbjct 33283 TTGATTGCTCCTAAGATACTACTTGCACCTGAAACGTGTAAACTAAAGATAGCTAAATCT 33342 Query 371485 ACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGTT 371544 || | ||| || |||||| | |||| ||| | || || |||||||| || || ||| Sbjct 33343 ACAGCACCTCCTGAGTGACTTGTAATATGACTCAGTGGGGGATAAACTGTCCATCCAGTT 33402 Query 371545 C 371545 | Sbjct 33403 C 33403 Score = 102 bits (112), Expect = 2e-16 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 |||| | ||| |||||||| |||| ||||| | || ||||||||||||| ||||||||| Sbjct 5360 TATTGCAAGGATTGGTAAGGTTCTGCGCGTTGTTTCGAATTAAACCACATGCTCCACCGC 5301 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | || | |||||| || |||| | ||||| |||||||| |||||| | ||| | Sbjct 5300 TTGTGTAAGCCCCCGTCAATTCCTTTAAATTTTAGCCTTGCGGCCGTAGTCTTTAGGCTG 5241 Query 7844 AATATTT-ACGCGTTAGC 7860 |||| | |||||||| Sbjct 5240 CTGATTTCATGCGTTAGC 5223 Score = 102 bits (112), Expect = 2e-16 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 |||| | ||| |||||||| |||| ||||| | || ||||||||||||| ||||||||| Sbjct 30946 TATTGCAAGGATTGGTAAGGTTCTGCGCGTTGTTTCGAATTAAACCACATGCTCCACCGC 31005 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | || | |||||| || |||| | ||||| |||||||| |||||| | ||| | Sbjct 31006 TTGTGTAAGCCCCCGTCAATTCCTTTAAATTTTAGCCTTGCGGCCGTAGTCTTTAGGCTG 31065 Query 7844 AATATTT-ACGCGTTAGC 7860 |||| | |||||||| Sbjct 31066 CTGATTTCATGCGTTAGC 31083 >seq15 Length=739136 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||||| || || |||| ||||| || || | ||| | || || Sbjct 297687 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCC 297746 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 297747 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 297806 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||| ||| Sbjct 297807 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTC 297866 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 297867 TTGCCGGT 297874 >seq4 Length=1584431 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||||| || || |||| ||||| || || | || | ||||| Sbjct 22757 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCATCC 22698 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || |||||||| || || || |||||||| Sbjct 22697 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 22638 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||| ||| Sbjct 22637 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 22578 Query 225682 TTGCCCGT 225689 || || || Sbjct 22577 TTACCGGT 22570 >seq19 Length=72585 Score = 87.8 bits (96), Expect = 4e-12 Identities = 97/128 (76%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| | ||| ||| ||||||||||||||||||||||||| | | Sbjct 5931 TGGTAAGGTTCTTCGTGTTGCATCGAATTAAACCACATACTCCACCGCTTGTGCGGGTCC 5872 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGG-TGGAATATTTACGC 7854 |||||| || |||||||||| | |||| |||| | | |||| |||| || |||| Sbjct 5871 CCGTCAATTCCTTTGAGTTTCACTTTTGCAAGCGTAATCCCCAGGCGGGAAACTTCACGC 5812 Query 7855 GTTAGCTT 7862 |||||||| Sbjct 5811 GTTAGCTT 5804 Score = 87.8 bits (96), Expect = 4e-12 Identities = 97/128 (76%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| | ||| ||| ||||||||||||||||||||||||| | | Sbjct 41212 TGGTAAGGTTCTTCGTGTTGCATCGAATTAAACCACATACTCCACCGCTTGTGCGGGTCC 41271 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGG-TGGAATATTTACGC 7854 |||||| || |||||||||| | |||| |||| | | |||| |||| || |||| Sbjct 41272 CCGTCAATTCCTTTGAGTTTCACTTTTGCAAGCGTAATCCCCAGGCGGGAAACTTCACGC 41331 Query 7855 GTTAGCTT 7862 |||||||| Sbjct 41332 GTTAGCTT 41339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530909693186