Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5 228 7e-55 >seq5 Length=1518631 Score = 228 bits (252), Expect = 7e-55 Identities = 433/643 (67%), Gaps = 7/643 (1%) Strand=Plus/Plus Query 29596 GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTC 29655 ||| ||| | || || || || || |||||||| |||||||||| | || || || Sbjct 815292 GTTGATCTTGAGCGTCGGGAACGGCCTGGGCTCGTTCTCGAGCTGCTTGTAGAGGGGCTC 815351 Query 29656 CACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29715 ||||||| ||| ||||| | || || | ||| ||||| ||||| || | || Sbjct 815352 GACGTGGTTGGAGTACACGTGGGTGTCGCCGCAGCAGTGCACAAAGTCTCCGGGCTTCAG 815411 Query 29716 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCAC 29775 ||| || || |||| |||| | ||||| || |||||||| |||||||| |||||||| Sbjct 815412 TCCGCACACCTGCGCCACCATGCAGGTGAGCAGGGAGTAGCTCGCGATGTTGAAGGGCAC 815471 Query 29776 CCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCAC 29835 ||||| |||||||| | ||||||||||| | ||||||||| | ||| |||| || Sbjct 815472 ACCGAGGCCCATGTCGCACGACCTCTGGTACATCTGGCACGATAACTCACCGTTTGCGAC 815531 Query 29836 GTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGG 29892 ||||||||| | ||||| |||||||| || |||||||| | | ||| Sbjct 815532 GTAAAACTGGCAGAACATG---TGGCACGGGGGCAGGGCCATCTCCTTGAGCGCCGCGGG 815588 Query 29893 GTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGC 29952 |||||| || | | ||| |||||||| | ||||||||| |||| ||| | | Sbjct 815589 GTTCCACGCGGTGAGCAGGATACGCCTGTCGTTGGGGTTGTTCTTGATCTTGTCGATCAC 815648 Query 29953 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNN 30012 | ||||| ||||| ||| || | ||||| | Sbjct 815649 CTCCGCGAGCTGGTCCACTCCCTGACCGGTATAGTCGGCGTGCATGTCCTTGTACTCGGC 815708 Query 30013 NNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC 30072 |||| || | ||||||||| ||||||||||| || ||||| ||||| |||||||| | Sbjct 815709 GCCGAAGTGGCGCCACTGGAAGCCGTACACCGGCCCGAGGTCACCCTCCTCCCTGTGACC 815768 Query 30073 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30132 | ||| |||| | | || | | ||||| ||||||| || | | |||| Sbjct 815769 CAGGCCGACGCTGTCGAGGTACTCGCGGCTTCCGTTACCGTCCCAAATGTGAATGTCCTT 815828 Query 30133 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30192 || ||| || |||| | | ||| | || |||||||||| | ||||||||| |||| Sbjct 815829 GTCCTGGAGTTCCTTGGCGCTGGTGCAGCCCTTGACGAACCAGATGAGCTCCTCCGCGAC 815888 Query 30193 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAACTG 30234 | || |||| ||||| | |||||| ||||| || ||||| ||| Sbjct 815889 GCCCCTCCAGAAGACACGCTTGGTGGTGAGCAGCGGGAAGCTG 815931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406163105947834