Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq5 228 7e-55
>seq5
Length=1518631
Score = 228 bits (252), Expect = 7e-55
Identities = 433/643 (67%), Gaps = 7/643 (1%)
Strand=Plus/Plus
Query 29596 GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTC 29655
||| ||| | || || || || || |||||||| |||||||||| | || || ||
Sbjct 815292 GTTGATCTTGAGCGTCGGGAACGGCCTGGGCTCGTTCTCGAGCTGCTTGTAGAGGGGCTC 815351
Query 29656 CACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29715
||||||| ||| ||||| | || || | ||| ||||| ||||| || | ||
Sbjct 815352 GACGTGGTTGGAGTACACGTGGGTGTCGCCGCAGCAGTGCACAAAGTCTCCGGGCTTCAG 815411
Query 29716 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCAC 29775
||| || || |||| |||| | ||||| || |||||||| |||||||| ||||||||
Sbjct 815412 TCCGCACACCTGCGCCACCATGCAGGTGAGCAGGGAGTAGCTCGCGATGTTGAAGGGCAC 815471
Query 29776 CCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCAC 29835
||||| |||||||| | ||||||||||| | ||||||||| | ||| |||| ||
Sbjct 815472 ACCGAGGCCCATGTCGCACGACCTCTGGTACATCTGGCACGATAACTCACCGTTTGCGAC 815531
Query 29836 GTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGG 29892
||||||||| | ||||| |||||||| || |||||||| | | |||
Sbjct 815532 GTAAAACTGGCAGAACATG---TGGCACGGGGGCAGGGCCATCTCCTTGAGCGCCGCGGG 815588
Query 29893 GTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGC 29952
|||||| || | | ||| |||||||| | ||||||||| |||| ||| | |
Sbjct 815589 GTTCCACGCGGTGAGCAGGATACGCCTGTCGTTGGGGTTGTTCTTGATCTTGTCGATCAC 815648
Query 29953 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNN 30012
| ||||| ||||| ||| || | ||||| |
Sbjct 815649 CTCCGCGAGCTGGTCCACTCCCTGACCGGTATAGTCGGCGTGCATGTCCTTGTACTCGGC 815708
Query 30013 NNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC 30072
|||| || | ||||||||| ||||||||||| || ||||| ||||| |||||||| |
Sbjct 815709 GCCGAAGTGGCGCCACTGGAAGCCGTACACCGGCCCGAGGTCACCCTCCTCCCTGTGACC 815768
Query 30073 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30132
| ||| |||| | | || | | ||||| ||||||| || | | ||||
Sbjct 815769 CAGGCCGACGCTGTCGAGGTACTCGCGGCTTCCGTTACCGTCCCAAATGTGAATGTCCTT 815828
Query 30133 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30192
|| ||| || |||| | | ||| | || |||||||||| | ||||||||| ||||
Sbjct 815829 GTCCTGGAGTTCCTTGGCGCTGGTGCAGCCCTTGACGAACCAGATGAGCTCCTCCGCGAC 815888
Query 30193 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAACTG 30234
| || |||| ||||| | |||||| ||||| || ||||| |||
Sbjct 815889 GCCCCTCCAGAAGACACGCTTGGTGGTGAGCAGCGGGAAGCTG 815931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406163105947834
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |