Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq19 812 0.0 >seq19 Length=72585 Score = 812 bits (900), Expect = 0.0 Identities = 780/995 (78%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 177589 TGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTC 177648 |||| || || ||| ||| | || || || | || ||||| || ||||||||||| Sbjct 10166 TGGGGACGTTTTTGTTCATGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTC 10225 Query 177649 GGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGT 177707 || || | ||||||||||| | || | || || || || |||||||| || || | Sbjct 10226 GGAGTATTAATGATCCCTACTTTACTTACAGCAACT-TCAGTATTCATCGTAGCATTTAT 10284 Query 177708 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTA 177767 |||||||||||||| || ||||| || |||||||| || || |||| || || ||||| Sbjct 10285 TGCTGCTCCTCCTGTAGATATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTA 10344 Query 177768 TGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTT 177827 || ||||||||||| ||||||||||| | ||| | ||||||||||| || || ||||| Sbjct 10345 CGGAAACAACATCATCTCTGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTT 10404 Query 177828 CTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA 177887 ||| || |||||||||||||||||||| ||||||||||| ||||| |||||||||| ||| Sbjct 10405 CTACCCAATCTGGGAAGCAGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCA 10464 Query 177888 ACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACT 177947 || | | | |||||| | ||||| || | | |||||||||||||||||||||| || Sbjct 10465 GCTTATCGTATGTCACTTCTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCT 10524 Query 177948 TTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGC 178007 ||||| ||| |||| |||||||| ||||| |||||| ||||||||||| || || || Sbjct 10525 TTCTTTCCGTTTAGGAATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGC 10584 Query 178008 AGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCC 178067 |||| | ||||||||| | || || || ||||||| |||||||||||||| | ||||| Sbjct 10585 AGCAACAGCTGTATTCATCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCC 10644 Query 178068 CCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 178127 || ||||| ||| || ||||||| |||| | || ||||| || |||||||||||||| Sbjct 10645 TCTTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCT 10704 Query 178128 GATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGC 178187 |||||||| ||||||||| | || || |||||||| || |||||||| || ||| ||| Sbjct 10705 TATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGC 10764 Query 178188 GATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCA 178247 ||||||||||| || || ||||| || || | ||||| || || ||||||| |||| Sbjct 10765 AATGCACGGTTCACTCGTAACTTCATCTCTCATCCGTGAGACTACTGAGAACG--AGTCT 10822 Query 178248 G--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCAT 178305 | ||| || ||||||||||| |||||||||||||| ||||||||||| ||||| || Sbjct 10823 GCAAACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACAC 10882 Query 178306 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCAC 178365 ||||||||||| || || |||||||||||||| || ||||||||||| ||||| || ||| Sbjct 10883 GGTTACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCAC 10942 Query 178366 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 178425 |||||||||||| ||||| || | || ||||||||||| ||| | ||| || || Sbjct 10943 TTCTTCCTCGCAATCTGGCCAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACT 11002 Query 178426 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAA 178485 ||||| |||||||| ||||| ||||||||||||||||| | | ||| | || Sbjct 11003 ATGGCTTTCAACCTTAACGGATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGT 11062 Query 178486 GTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCAC 178545 || | ||||| ||||| || | | ||||||||| || ||||||||||| |||||| Sbjct 11063 GTAATTAACACATGGGCTGATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCAC 11122 Query 178546 GAGCGTAATGCTCACAACTTCCCTCTTGACCTCGC 178580 |||||||| |||||||||||||| |||||||| || Sbjct 11123 GAGCGTAACGCTCACAACTTCCCACTTGACCTTGC 11157 Score = 812 bits (900), Expect = 0.0 Identities = 780/995 (78%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 177589 TGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTC 177648 |||| || || ||| ||| | || || || | || ||||| || ||||||||||| Sbjct 36977 TGGGGACGTTTTTGTTCATGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTC 36918 Query 177649 GGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGT 177707 || || | ||||||||||| | || | || || || || |||||||| || || | Sbjct 36917 GGAGTATTAATGATCCCTACTTTACTTACAGCAACT-TCAGTATTCATCGTAGCATTTAT 36859 Query 177708 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTA 177767 |||||||||||||| || ||||| || |||||||| || || |||| || || ||||| Sbjct 36858 TGCTGCTCCTCCTGTAGATATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTA 36799 Query 177768 TGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTT 177827 || ||||||||||| ||||||||||| | ||| | ||||||||||| || || ||||| Sbjct 36798 CGGAAACAACATCATCTCTGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTT 36739 Query 177828 CTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA 177887 ||| || |||||||||||||||||||| ||||||||||| ||||| |||||||||| ||| Sbjct 36738 CTACCCAATCTGGGAAGCAGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCA 36679 Query 177888 ACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACT 177947 || | | | |||||| | ||||| || | | |||||||||||||||||||||| || Sbjct 36678 GCTTATCGTATGTCACTTCTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCT 36619 Query 177948 TTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGC 178007 ||||| ||| |||| |||||||| ||||| |||||| ||||||||||| || || || Sbjct 36618 TTCTTTCCGTTTAGGAATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGC 36559 Query 178008 AGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCC 178067 |||| | ||||||||| | || || || ||||||| |||||||||||||| | ||||| Sbjct 36558 AGCAACAGCTGTATTCATCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCC 36499 Query 178068 CCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 178127 || ||||| ||| || ||||||| |||| | || ||||| || |||||||||||||| Sbjct 36498 TCTTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCT 36439 Query 178128 GATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGC 178187 |||||||| ||||||||| | || || |||||||| || |||||||| || ||| ||| Sbjct 36438 TATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGC 36379 Query 178188 GATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCA 178247 ||||||||||| || || ||||| || || | ||||| || || |||||||| ||| Sbjct 36378 AATGCACGGTTCACTCGTAACTTCATCTCTCATCCGTGAGACTACTGAGAACGA--GTCT 36321 Query 178248 G--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCAT 178305 | ||| || ||||||||||| |||||||||||||| ||||||||||| ||||| || Sbjct 36320 GCAAACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACAC 36261 Query 178306 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCAC 178365 ||||||||||| || || |||||||||||||| || ||||||||||| ||||| || ||| Sbjct 36260 GGTTACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCAC 36201 Query 178366 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 178425 |||||||||||| ||||| || | || ||||||||||| ||| | ||| || || Sbjct 36200 TTCTTCCTCGCAATCTGGCCAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACT 36141 Query 178426 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAA 178485 ||||| |||||||| ||||| ||||||||||||||||| | | ||| | || Sbjct 36140 ATGGCTTTCAACCTTAACGGATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGT 36081 Query 178486 GTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCAC 178545 || | ||||| ||||| || | | ||||||||| || ||||||||||| |||||| Sbjct 36080 GTAATTAACACATGGGCTGATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCAC 36021 Query 178546 GAGCGTAATGCTCACAACTTCCCTCTTGACCTCGC 178580 |||||||| |||||||||||||| |||||||| || Sbjct 36020 GAGCGTAACGCTCACAACTTCCCACTTGACCTTGC 35986 Score = 646 bits (716), Expect = 1e-180 Identities = 757/1020 (74%), Gaps = 2/1020 (0%) Strand=Plus/Plus Query 178833 GGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGG 178892 || |||||||| | || |||||||||||||||||||| ||||| || || |||||| Sbjct 1989 GGATGGTTTGACAACGTAGACGACTGGCTTAAGCGTGATCGTTTCGTATTCGTAGGTTGG 2048 Query 178893 TCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACA 178952 ||||| || | | ||||| ||| ||| | ||| | || || ||| | || || ||| Sbjct 2049 TCAGGAATTTTATTATTCCCATGTGCATACTTTGCAGTTGGTGGATGGTTTACTGGAACA 2108 Query 178953 ACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAAT 179012 |||||||| || || ||||| || ||||| | || ||| || |||||||||||||| Sbjct 2109 ACATTCGTAACTTCATGGTACACACACGGTTTAGCAAGTTCATACCTTGAGGGATGTAAC 2168 Query 179013 TTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTA 179072 |||||||| | || |||||||| || || || | | | || || || ||||| || Sbjct 2169 TTCCTTACATCGGCAGTATCAACACCATCTAACAGTATGGCTCACTCACTTCTTCTCCTT 2228 Query 179073 TGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCT 179132 ||||| |||||||| || || || ||| || ||| || ||||| ||| ||||| | Sbjct 2229 TGGGGACCAGAAGCACAAGGTGAGTTCACACGTTGGTGTCAGCTTGGTGGATTATGGACA 2288 Query 179133 TTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATC 179192 || || || || |||||||| |||| | || || || ||||| || || |||||||| Sbjct 2289 TTCGTAGCACTTCACGGTGCATTCGGATTAATCGGATTTATGCTCCGTCAATTTGAAATT 2348 Query 179193 GCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTC 179252 |||||| ||| |||||||| ||||| || || || || || | || || ||||| Sbjct 2349 GCACGTGCAGTACAAATTCGTCCGTACAACGCGATTGCATTCTCAGCACCTATCGCTGTA 2408 Query 179253 TTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCG 179312 ||||| ||||| || || || || || || ||||| || ||||||||||| || || Sbjct 2409 TTTGTATCTGTATTCCTTATTTACCCACTTGGACAATCAGGATGGTTCTTTGCACCTTCA 2468 Query 179313 TTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACG 179372 ||||| || || | |||||||| ||| | || ||| | || || |||||||||||||| Sbjct 2469 TTTGGTGTAGCGGGAATTTTCCGTTTCATTCTTTTCTTCCAAGGGTTCCACAACTGGACA 2528 Query 179373 CTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCC 179432 || ||||| |||||||||||||| ||||| ||| | || || | |||| | |||||||| Sbjct 2529 CTTAACCCATTCCACATGATGGGAGTAGCTGGTGTACTTGGAGCAGCACTTCTTTGTGCG 2588 Query 179433 ATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTC 179492 ||||| || || || |||||||||||||| || ||||| |||| ||||| || ||| Sbjct 2589 ATTCACGGAGCAACTGTAGAGAACACACTTTTCGAAGATGGTGATGGTTCAAACACTTTC 2648 Query 179493 AAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTC 179552 ||||| | || || |||| || ||||| || || ||||| || || ||||||||| Sbjct 2649 CGTGCATTTAACCCAACTCAAGCTGAAGAGACTTACTCAATGGTAACAGCAAACCGTTTC 2708 Query 179553 TGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTG 179612 ||||| ||||| || ||| | || ||| || ||||||||||| || ||||||||| | Sbjct 2709 TGGTCACAGATTTTCGGTGTAGCTTTCTCTAACAAGCGTTGGCTTCACTTCTTTATGCTT 2768 Query 179613 TTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCA-TTGGTATTATTGGTCTTGCACTTAA 179671 || || ||||| | || | |||| || |||| ||||| || | || | |||||||| Sbjct 2769 TTCGTACCTGTAACAGGGTTATGGATGTC-AGCACTTGGTGTTGTAGGATTAGCACTTAA 2827 Query 179672 CCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGA 179731 ||| | || || ||||| || |||||||||||| | || || || ||||||||||| || Sbjct 2828 CCTCCGTGCATACGACTTCGTATCACAAGAGATCCGTGCAGCTGAAGATCCTGAGTTTGA 2887 Query 179732 GACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGT 179791 || ||||| || ||||| || || | || |||||| | ||||| ||||||||| | Sbjct 2888 AACATTCTACACTAAGAATATTCTTCTTAACGAAGGTATTCGTGCATGGATGGCAGCTCA 2947 Query 179792 CGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 ||||| || ||||||||| ||||||| ||||| || ||| | ||| | || |||||||| Sbjct 2948 AGATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGCTCT 3007 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 18369 GGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGGG 18428 |||| | || ||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 27603 GGGTCGATGCCCGAGTGGTTAATGGGGGCGGACTGTAAATCCGCTGGCT-TGCCTACACT 27545 Query 18429 GGTTCAAATCC 18439 ||||||||||| Sbjct 27544 GGTTCAAATCC 27534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596307058377040