Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq8 181 2e-40 seq4 145 2e-29 seq15 132 1e-25 seq6 132 1e-25 seq5 114 3e-20 seq1 89.7 1e-12 seq2 86.0 1e-11 >seq8 Length=1276107 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || || || || | ||| || || |||||||||||||| || Sbjct 455642 ACCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 455701 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||||| || || |||||| || Sbjct 455702 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 455761 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| |||| ||||| Sbjct 455762 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 455821 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 455822 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455869 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || || || || | ||| || || |||||||||||||| || Sbjct 455870 ACCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 455929 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||||| || || |||||| || Sbjct 455930 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 455989 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| |||| ||||| Sbjct 455990 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 456049 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 456050 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456097 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || ||||| || || || || | ||| || || |||||||||||||| || Sbjct 455415 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455474 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || || ||||||| || || |||||| || Sbjct 455475 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455534 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| |||| ||||| Sbjct 455535 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 455594 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 455595 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455641 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || || || || | ||| || || |||||||||||||| || Sbjct 456098 ACCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 456157 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||||| || || |||||| || Sbjct 456158 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 456217 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| |||| ||||| Sbjct 456218 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 456277 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 456278 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456325 >seq4 Length=1584431 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || || || || | ||| || || |||||||||||||| || Sbjct 22772 CCACCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 22713 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || || ||||||| || || ||||| || Sbjct 22712 AGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 22653 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| |||| || || Sbjct 22652 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 22593 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| |||||||| || Sbjct 22592 TCGAGGGTGATGGTCTTACCGGT 22570 >seq15 Length=739136 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || || || || | ||| || || |||||||||||||| || Sbjct 297672 CCGCCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 297731 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || || ||||||| || || |||||| || Sbjct 297732 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 297791 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || | || || Sbjct 297792 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACC 297851 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 297852 TCGAGGGTGATGGTCTTGCCGGT 297874 >seq6 Length=1431126 Score = 132 bits (146), Expect = 1e-25 Identities = 306/456 (67%), Gaps = 14/456 (3%) Strand=Plus/Minus Query 229950 TTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGAGTTTC 230009 || || ||||| || |||||| | |||| | ||||| || | |||||||| ||| Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448 Query 230010 TGCGCCATCTTTTGGCTACGCAACAAGGGCG---TCATGCCCGGGCTCGGTCTGTCGAAC 230066 ||| |||||| ||||| || ||| ||| |||||||||| ||| | || ||| Sbjct 1273447 TGCTCCATCTACTGGCTG---AAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 1273391 Query 230067 GAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGG-TCTTGTATTCGAA 230125 || |||||||| | ||||| || ||||||| || | || ||| | || | || ||| | Sbjct 1273390 GAGCTCATCAGCCGCGACGAGGGCCTTCACC-GCGACTTTGCGTGCCTCCTCTACTCGTA 1273332 Query 230126 GCTAAATAACAAACTACCTTTCGAAACGGTG---AAACAAATCGTCACAGAAGTAGTTGC 230182 | || || || | | ||| | || | || ||||||| || | || | Sbjct 1273331 CATCAACAAGAAGC---CCAACGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGA 1273275 Query 230183 AAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGA 230242 | || |||||||| | |||||||| | || ||| || |||||||||| || || Sbjct 1273274 GATCGAGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCGGA 1273215 Query 230243 TCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGA 230302 ||||||| | || ||||| ||||| || |||| | ||| ||| || Sbjct 1273214 TCTCATGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGCATGTC 1273155 Query 230303 GAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAA 230362 ||| | ||| ||| | ||||| |||| | ||||||||||| || |||||||| || Sbjct 1273154 GAAGGAGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAA 1273095 Query 230363 AACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA 230398 || ||||||||||| ||||| || |||| || || Sbjct 1273094 GACCAACTTCTTCGAGAAGCGCGTGGGCGAGTACCA 1273059 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| || ||||| || || ||| | ||||| |||||||||| ||||| || Sbjct 1413927 ACCCTCCTTGTCCTGAATCTTAGCCTTCACGTTGTCGATGGTGTCCGAAGACTCGACCTC 1413868 Query 283055 GAGAGTGATCGTCTTACCCGT 283075 ||| ||||| ||||| ||||| Sbjct 1413867 GAGGGTGATGGTCTTGCCCGT 1413847 >seq5 Length=1518631 Score = 114 bits (126), Expect = 3e-20 Identities = 194/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 ||||||||||| | || ||| |||||||| || || ||||| | | ||| ||||| Sbjct 240107 GTGAAAATGTAACGGGGGGACGCGTGGTCCTTACCGCCCTGCAGGCGGGTACCGAACTGG 240048 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || ||||| ||| ||| | ||||||||| ||||| |||| || || | ||| Sbjct 240047 CCGGAGGGCACCAGCAGGTTCACGTTGTTGCTCCCGACAAAATCTTGCGCGAGGCCGACG 239988 Query 273900 ATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCA 273959 || || | ||| ||||||||||||| || ||| ||| || | || || || Sbjct 239987 ATGGTGGACGCGAGGCTGGCCTCGCCGTGGTGGTACGCGGAGTGCTCAGAGACGTAGCCC 239928 Query 273960 CTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACC 274019 || ||| ||||| || | ||| | | | || |||||||| || | | |||| Sbjct 239927 GAGAGCTGCGCAACTTTGATGTCGGACTTGAGCTTACGCTTGAAGCACGAGAAGAGCACC 239868 Query 274020 TTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAAT 274060 |||| |||||||||||||||||| || ||||| || || || Sbjct 239867 TTCCTCTGCGAGGGCTTGAACCCGTCGACGACGGAAGGGAT 239827 >seq1 Length=2053059 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485 ||||| ||||| || |||||| ||||| | || || ||| || | | ||||| ||| Sbjct 1136527 AAAATCGACCCATACATCAACATCGATGCCGGAACTATGTCGCCATTTGAGCATGGCGAA 1136586 Query 301486 GTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTC 301545 |||||||| |||||||||| ||| | || || ||||| || ||||||| |||||| Sbjct 1136587 GTGTTCGTTCTTGATGATGGTGGCGAAGCTGACCTTGATCTTGGCAACTACGAGCGTTTC 1136646 Query 301546 ACTTCATTAACCCTTAAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTTAAAAGTT 301605 | | ||| || | || || |||| | ||||| || | |||| | || Sbjct 1136647 GTTGACTCAACTCTAACACGGGACCATAATATAACGACCGGAAAGATTTACCAGACGGTG 1136706 Query 301606 ATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCC 301659 |||| ||| || || |||| || || |||||||| ||||| ||| |||| Sbjct 1136707 ATCGCAAAAGAGCGAAAAGGGGAATACCTTGGAAAGACTGTGCAGGTTAGTCCC 1136760 >seq2 Length=1914325 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 316186 CGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCG 316245 ||||| ||||||||| ||||| ||| | || || || | |||||||||||||| ||| Sbjct 1538640 CGCCAGCGGATGTACTCGTTGGGGGTCTTCTCGAGGTGCTGTTCGATGTGGTGGAAGGCG 1538699 Query 316246 TGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACGCTACC 316295 ||||| || |||||||| | ||| || || |||||||| ||| |||| Sbjct 1538700 TGCTGCGCAACGTAAGCGACGCGCGCGTTGGGGTGCTTCCACACGGTACC 1538749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738945184426