Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq8 181 2e-40
seq4 145 2e-29
seq15 132 1e-25
seq6 132 1e-25
seq5 114 3e-20
seq1 89.7 1e-12
seq2 86.0 1e-11
>seq8
Length=1276107
Score = 181 bits (200), Expect = 2e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || ||||| || || || || | ||| || || |||||||||||||| ||
Sbjct 455642 ACCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 455701
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || || ||||||| || || |||||| ||
Sbjct 455702 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 455761
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| || || ||| | ||||| ||||| |||| |||||
Sbjct 455762 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 455821
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | |||||| ||||| ||||||||
Sbjct 455822 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455869
Score = 181 bits (200), Expect = 2e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || ||||| || || || || | ||| || || |||||||||||||| ||
Sbjct 455870 ACCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 455929
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || || ||||||| || || |||||| ||
Sbjct 455930 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 455989
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| || || ||| | ||||| ||||| |||| |||||
Sbjct 455990 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 456049
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | |||||| ||||| ||||||||
Sbjct 456050 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456097
Score = 179 bits (198), Expect = 8e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || ||||| || || || || | ||| || || |||||||||||||| ||
Sbjct 455415 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455474
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || || ||||||| || || |||||| ||
Sbjct 455475 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455534
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| || || ||| | ||||| ||||| |||| |||||
Sbjct 455535 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 455594
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | |||||| ||||| ||||||||
Sbjct 455595 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455641
Score = 178 bits (196), Expect = 3e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || ||||| || || || || | ||| || || |||||||||||||| ||
Sbjct 456098 ACCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 456157
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || || ||||||| || || |||||| ||
Sbjct 456158 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 456217
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| || || ||| | ||||| ||||| |||| |||||
Sbjct 456218 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 456277
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | |||||| ||||| ||||||||
Sbjct 456278 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456325
>seq4
Length=1584431
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || || || || || || | ||| || || |||||||||||||| ||
Sbjct 22772 CCACCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 22713
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || || ||||||| || || ||||| ||
Sbjct 22712 AGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 22653
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| || || ||| | ||||| ||||| |||| || ||
Sbjct 22652 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 22593
Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075
||||| ||||| |||||||| ||
Sbjct 22592 TCGAGGGTGATGGTCTTACCGGT 22570
>seq15
Length=739136
Score = 132 bits (146), Expect = 1e-25
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || || || || || || || || | ||| || || |||||||||||||| ||
Sbjct 297672 CCGCCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 297731
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| ||||| || || || || || ||||||| || || |||||| ||
Sbjct 297732 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 297791
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| || || ||| | ||||| ||||| || | || ||
Sbjct 297792 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACC 297851
Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075
||||| ||||| ||||| || ||
Sbjct 297852 TCGAGGGTGATGGTCTTGCCGGT 297874
>seq6
Length=1431126
Score = 132 bits (146), Expect = 1e-25
Identities = 306/456 (67%), Gaps = 14/456 (3%)
Strand=Plus/Minus
Query 229950 TTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGAGTTTC 230009
|| || ||||| || |||||| | |||| | ||||| || | |||||||| |||
Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448
Query 230010 TGCGCCATCTTTTGGCTACGCAACAAGGGCG---TCATGCCCGGGCTCGGTCTGTCGAAC 230066
||| |||||| ||||| || ||| ||| |||||||||| ||| | || |||
Sbjct 1273447 TGCTCCATCTACTGGCTG---AAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 1273391
Query 230067 GAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGG-TCTTGTATTCGAA 230125
|| |||||||| | ||||| || ||||||| || | || ||| | || | || ||| |
Sbjct 1273390 GAGCTCATCAGCCGCGACGAGGGCCTTCACC-GCGACTTTGCGTGCCTCCTCTACTCGTA 1273332
Query 230126 GCTAAATAACAAACTACCTTTCGAAACGGTG---AAACAAATCGTCACAGAAGTAGTTGC 230182
| || || || | | ||| | || | || ||||||| || | || |
Sbjct 1273331 CATCAACAAGAAGC---CCAACGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGA 1273275
Query 230183 AAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGA 230242
| || |||||||| | |||||||| | || ||| || |||||||||| || ||
Sbjct 1273274 GATCGAGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCGGA 1273215
Query 230243 TCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGA 230302
||||||| | || ||||| ||||| || |||| | ||| ||| ||
Sbjct 1273214 TCTCATGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGCATGTC 1273155
Query 230303 GAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAA 230362
||| | ||| ||| | ||||| |||| | ||||||||||| || |||||||| ||
Sbjct 1273154 GAAGGAGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAA 1273095
Query 230363 AACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA 230398
|| ||||||||||| ||||| || |||| || ||
Sbjct 1273094 GACCAACTTCTTCGAGAAGCGCGTGGGCGAGTACCA 1273059
Score = 84.2 bits (92), Expect = 5e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054
|||||||||||| || ||||| || || ||| | ||||| |||||||||| ||||| ||
Sbjct 1413927 ACCCTCCTTGTCCTGAATCTTAGCCTTCACGTTGTCGATGGTGTCCGAAGACTCGACCTC 1413868
Query 283055 GAGAGTGATCGTCTTACCCGT 283075
||| ||||| ||||| |||||
Sbjct 1413867 GAGGGTGATGGTCTTGCCCGT 1413847
>seq5
Length=1518631
Score = 114 bits (126), Expect = 3e-20
Identities = 194/281 (69%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839
||||||||||| | || ||| |||||||| || || ||||| | | ||| |||||
Sbjct 240107 GTGAAAATGTAACGGGGGGACGCGTGGTCCTTACCGCCCTGCAGGCGGGTACCGAACTGG 240048
Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899
|| ||||| ||| ||| | ||||||||| ||||| |||| || || | |||
Sbjct 240047 CCGGAGGGCACCAGCAGGTTCACGTTGTTGCTCCCGACAAAATCTTGCGCGAGGCCGACG 239988
Query 273900 ATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCA 273959
|| || | ||| ||||||||||||| || ||| ||| || | || || ||
Sbjct 239987 ATGGTGGACGCGAGGCTGGCCTCGCCGTGGTGGTACGCGGAGTGCTCAGAGACGTAGCCC 239928
Query 273960 CTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACC 274019
|| ||| ||||| || | ||| | | | || |||||||| || | | ||||
Sbjct 239927 GAGAGCTGCGCAACTTTGATGTCGGACTTGAGCTTACGCTTGAAGCACGAGAAGAGCACC 239868
Query 274020 TTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAAT 274060
|||| |||||||||||||||||| || ||||| || || ||
Sbjct 239867 TTCCTCTGCGAGGGCTTGAACCCGTCGACGACGGAAGGGAT 239827
>seq1
Length=2053059
Score = 89.7 bits (98), Expect = 1e-12
Identities = 160/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485
||||| ||||| || |||||| ||||| | || || ||| || | | ||||| |||
Sbjct 1136527 AAAATCGACCCATACATCAACATCGATGCCGGAACTATGTCGCCATTTGAGCATGGCGAA 1136586
Query 301486 GTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTC 301545
|||||||| |||||||||| ||| | || || ||||| || ||||||| ||||||
Sbjct 1136587 GTGTTCGTTCTTGATGATGGTGGCGAAGCTGACCTTGATCTTGGCAACTACGAGCGTTTC 1136646
Query 301546 ACTTCATTAACCCTTAAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTTAAAAGTT 301605
| | ||| || | || || |||| | ||||| || | |||| | ||
Sbjct 1136647 GTTGACTCAACTCTAACACGGGACCATAATATAACGACCGGAAAGATTTACCAGACGGTG 1136706
Query 301606 ATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCC 301659
|||| ||| || || |||| || || |||||||| ||||| ||| ||||
Sbjct 1136707 ATCGCAAAAGAGCGAAAAGGGGAATACCTTGGAAAGACTGTGCAGGTTAGTCCC 1136760
>seq2
Length=1914325
Score = 86.0 bits (94), Expect = 1e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 316186 CGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCG 316245
||||| ||||||||| ||||| ||| | || || || | |||||||||||||| |||
Sbjct 1538640 CGCCAGCGGATGTACTCGTTGGGGGTCTTCTCGAGGTGCTGTTCGATGTGGTGGAAGGCG 1538699
Query 316246 TGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACGCTACC 316295
||||| || |||||||| | ||| || || |||||||| ||| ||||
Sbjct 1538700 TGCTGCGCAACGTAAGCGACGCGCGCGTTGGGGTGCTTCCACACGGTACC 1538749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738945184426
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