Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq8 127 1e-24
seq15 105 5e-18
seq4 100 2e-16
seq6 82.4 5e-11
>seq8
Length=1276107
Score = 127 bits (140), Expect = 1e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || ||| |||||| ||||||||||| || ||||| ||| |||| ||
Sbjct 456116 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTC 456175
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||||| |||||||| || | || | || ||||| |||
Sbjct 456176 GAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 456235
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | |||||||||| || || ||||| | || || |||||
Sbjct 456236 GATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTT 456295
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| |||||||| |||||
Sbjct 456296 GCCGGTGAGAGTCTTGACGAAGATCTGCAT 456325
Score = 122 bits (134), Expect = 6e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || ||| |||||| ||||||||||| || ||||| ||| | || ||
Sbjct 455432 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTC 455491
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||||| |||||||| || | || | || ||||| |||
Sbjct 455492 GAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 455551
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | |||||||||| || || ||||| | || || |||||
Sbjct 455552 GATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTT 455611
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| |||||||| |||||
Sbjct 455612 GCCGGTGAGAGTCTTGACGAAGATCTGCAT 455641
Score = 122 bits (134), Expect = 6e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || ||| |||||| ||||||||||| || ||||| ||| | || ||
Sbjct 455660 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTC 455719
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||||| |||||||| || | || | || ||||| |||
Sbjct 455720 GAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 455779
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | |||||||||| || || ||||| | || || |||||
Sbjct 455780 GATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTT 455839
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| |||||||| |||||
Sbjct 455840 GCCGGTGAGAGTCTTGACGAAGATCTGCAT 455869
Score = 122 bits (134), Expect = 6e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || ||| |||||| ||||||||||| || ||||| ||| | || ||
Sbjct 455888 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTC 455947
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||||| |||||||| || | || | || ||||| |||
Sbjct 455948 GAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 456007
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | |||||||||| || || ||||| | || || |||||
Sbjct 456008 GATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTT 456067
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| |||||||| |||||
Sbjct 456068 GCCGGTGAGAGTCTTGACGAAGATCTGCAT 456097
>seq15
Length=739136
Score = 105 bits (116), Expect = 5e-18
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || ||| |||||| ||||||||||| || ||||| ||| |||| ||
Sbjct 297689 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTC 297748
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||||| |||||||| || | || | || ||||| |||
Sbjct 297749 GAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 297808
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | |||||||||| || |||||||| | || || |||||
Sbjct 297809 GATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTT 297868
Query 44308 TCCCGTGA 44315
|| ||||
Sbjct 297869 GCCGGTGA 297876
>seq4
Length=1584431
Score = 100 bits (110), Expect = 2e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || ||| |||||| ||||||||||| || ||||| ||| | || ||
Sbjct 22755 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCATCCTC 22696
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||||| |||||||| || | || | || ||||| |||
Sbjct 22695 GAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 22636
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | |||||||||| || |||||||| | || || |||||
Sbjct 22635 GATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTT 22576
Query 44308 TCCCGTGA 44315
|| ||||
Sbjct 22575 ACCGGTGA 22568
>seq6
Length=1431126
Score = 82.4 bits (90), Expect = 5e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| ||| |||||| ||||||||||| || ||||| ||| |||| ||
Sbjct 1414383 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCGTCCTCG 1414324
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||||||| || || ||||| | ||||||||| ||
Sbjct 1414323 AGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTC 1414289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990316639723
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