Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq8 159 8e-34
seq15 140 8e-28
seq4 140 8e-28
>seq8
Length=1276107
Score = 159 bits (176), Expect = 8e-34
Identities = 159/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || |||||||| || || || |||||||||||||| || || |||
Sbjct 455638 CAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAC 455579
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 455578 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 455519
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || |||||||| ||||| | ||||| || || || ||| ||
Sbjct 455518 CGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAACATC 455459
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || |||||
Sbjct 455458 CAGAAGGAGTCCACCCTCCACCTTGT 455433
Score = 159 bits (176), Expect = 8e-34
Identities = 159/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || |||||||| || || || |||||||||||||| || || |||
Sbjct 455866 CAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAC 455807
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 455806 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 455747
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || |||||||| ||||| | ||||| || || || ||| ||
Sbjct 455746 CGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAACATC 455687
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || |||||
Sbjct 455686 CAGAAGGAGTCCACCCTCCACCTTGT 455661
Score = 159 bits (176), Expect = 8e-34
Identities = 159/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || |||||||| || || || |||||||||||||| || || |||
Sbjct 456094 CAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAC 456035
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 456034 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 455975
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || |||||||| ||||| | ||||| || || || ||| ||
Sbjct 455974 CGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAACATC 455915
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || |||||
Sbjct 455914 CAGAAGGAGTCCACCCTCCACCTTGT 455889
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || |||||||| || || || |||||||||||||| || || |||
Sbjct 456322 CAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAC 456263
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 456262 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 456203
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || |||||||| || || | ||||| || || || ||| ||
Sbjct 456202 CGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAACATC 456143
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || |||||
Sbjct 456142 CAGAAGGAGTCCACCCTCCACCTTGT 456117
>seq15
Length=739136
Score = 140 bits (154), Expect = 8e-28
Identities = 143/187 (76%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 297876 TCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAACGTCAAGG 297817
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| |||||||| || || ||||| || |||||||| || || |||||||| || |
Sbjct 297816 CCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGCA 297757
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| |||||||| || || | ||||| || || || ||| |||| || || || || || |
Sbjct 297756 AGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCC 297697
Query 178123 ATCTTGT 178129
| || ||
Sbjct 297696 ACCTCGT 297690
>seq4
Length=1584431
Score = 140 bits (154), Expect = 8e-28
Identities = 143/187 (76%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 22568 TCACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGG 22627
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| |||||||| || || ||||| || |||||||| || || |||||||| || |
Sbjct 22628 CCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCA 22687
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| |||||||| ||||| | || || || || || ||| |||| || || || || || |
Sbjct 22688 AGCAGCTCGAGGATGGCCGCACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCC 22747
Query 178123 ATCTTGT 178129
| || ||
Sbjct 22748 ACCTCGT 22754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730906966686
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |