Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8 159 8e-34 seq15 140 8e-28 seq4 140 8e-28 >seq8 Length=1276107 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || |||||||||||||| || || ||| Sbjct 455638 CAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAC 455579 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 455578 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 455519 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| | ||||| || || || ||| || Sbjct 455518 CGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAACATC 455459 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 455458 CAGAAGGAGTCCACCCTCCACCTTGT 455433 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || |||||||||||||| || || ||| Sbjct 455866 CAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAC 455807 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 455806 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 455747 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| | ||||| || || || ||| || Sbjct 455746 CGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAACATC 455687 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 455686 CAGAAGGAGTCCACCCTCCACCTTGT 455661 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || |||||||||||||| || || ||| Sbjct 456094 CAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAC 456035 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 456034 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 455975 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| | ||||| || || || ||| || Sbjct 455974 CGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAACATC 455915 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 455914 CAGAAGGAGTCCACCCTCCACCTTGT 455889 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || |||||||||||||| || || ||| Sbjct 456322 CAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAC 456263 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 456262 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 456203 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | ||||| || || || ||| || Sbjct 456202 CGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAACATC 456143 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 456142 CAGAAGGAGTCCACCCTCCACCTTGT 456117 >seq15 Length=739136 Score = 140 bits (154), Expect = 8e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||||||||||||||| || ||||||||||| |||||||| Sbjct 297876 TCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAACGTCAAGG 297817 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || ||||| || |||||||| || || |||||||| || | Sbjct 297816 CCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGCA 297757 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| || || | ||||| || || || ||| |||| || || || || || | Sbjct 297756 AGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCC 297697 Query 178123 ATCTTGT 178129 | || || Sbjct 297696 ACCTCGT 297690 >seq4 Length=1584431 Score = 140 bits (154), Expect = 8e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||||||||||||||| || ||||||||||| |||||||| Sbjct 22568 TCACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGG 22627 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || ||||| || |||||||| || || |||||||| || | Sbjct 22628 CCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCA 22687 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| ||||| | || || || || || ||| |||| || || || || || | Sbjct 22688 AGCAGCTCGAGGATGGCCGCACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCC 22747 Query 178123 ATCTTGT 178129 | || || Sbjct 22748 ACCTCGT 22754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730906966686