Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq8 147 2e-30
seq4 143 2e-29
seq15 141 9e-29
seq6 100 3e-16
seq5 89.7 5e-13
>seq8
Length=1276107
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | ||| || || || ||| ||||||||| ||||| ||||| | |
Sbjct 456099 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 456158
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||| ||||| ||||||||||| ||||| | |||
Sbjct 456159 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 456218
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| || | || || | ||| | | | |||||| ||||| ||
Sbjct 456219 ATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 456277
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 456278 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456325
Score = 145 bits (160), Expect = 7e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | ||| || || || ||| ||||||||| ||||| ||||| |
Sbjct 455414 GCCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 455473
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| ||||| | || |||||||||||||| ||||| ||||||||||| ||||| | |||
Sbjct 455474 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 455533
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| || | || || | ||| | | | |||||| ||||| |
Sbjct 455534 GATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGA 455592
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 455593 CCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455641
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | ||| || || || ||| ||||||||| ||||| ||||| | |
Sbjct 455643 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455702
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || |||||||||||||| ||||| ||||||||||| ||||| | |||
Sbjct 455703 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455762
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| || | || || | ||| | | | |||||| ||||| ||
Sbjct 455763 ATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 455821
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 455822 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455869
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | ||| || || || ||| ||||||||| ||||| ||||| | |
Sbjct 455871 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455930
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || |||||||||||||| ||||| ||||||||||| ||||| | |||
Sbjct 455931 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455990
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| || | || || | ||| | | | |||||| ||||| ||
Sbjct 455991 ATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 456049
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 456050 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456097
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | ||| || || || ||| ||||||||| ||||| ||||| | |
Sbjct 456327 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 456386
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| |||||||||||||| ||||| ||||||||||| ||||| | |||
Sbjct 456387 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 456445
>seq4
Length=1584431
Score = 143 bits (158), Expect = 2e-29
Identities = 158/208 (76%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|||||| ||||| ||||| | ||| || || || ||| ||||||||| ||||| |||||
Sbjct 22776 ACCGCCACCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 22717
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
| ||||||||| | || |||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 22716 CGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGG 22657
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810
||| | || |||||||||| || | || || | ||| | | | |||||| ||||
Sbjct 22656 GGGGATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACT 22598
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGT 41838
||||||| | || || || ||||| ||
Sbjct 22597 CCACCTCGAGGGTGATGGTCTTACCGGT 22570
>seq15
Length=739136
Score = 141 bits (156), Expect = 9e-29
Identities = 156/205 (76%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||| ||||| | ||| || || || ||| ||||||||| ||||| ||||| |
Sbjct 297671 GCCGCCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 297730
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| ||||| |||| |||||||||||||| ||||| ||||||||||| ||||| | |||
Sbjct 297731 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGG 297790
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| || | || || | ||| | | | |||||| ||||||||
Sbjct 297791 GATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCA 297849
Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838
|||| | || || || || || ||
Sbjct 297850 CCTCGAGGGTGATGGTCTTGCCGGT 297874
>seq6
Length=1431126
Score = 100 bits (110), Expect = 3e-16
Identities = 94/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | || || || || ||| ||||||||| ||||| ||||| |
Sbjct 1414402 GCCACCGCGGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 1414343
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| |||| |||||||||||||| ||||| || || ||||| ||||| | |||
Sbjct 1414342 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCAGGGGG 1414283
>seq5
Length=1518631
Score = 89.7 bits (98), Expect = 5e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 85780 CCCCGCCGGGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTA 85839
|||||| || | |||| || ||||| ||| | ||||| ||||| | |||||| |
Sbjct 1420048 CCCCGCAGGACACCTACGCGCGCATCGCCCCTAGGTCCGGACTCGCGTGGAAGCACTTCA 1420107
Query 85840 TCGACGTGGGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCT 85899
||||| ||||| || ||| ||||| ||| |||||||| |||||| | || | || |
Sbjct 1420108 TCGACACCGGCGCGGGCGTCGTCGACTACGATTACCGCGGCAACGTCGGCGTCATCCTGT 1420167
Query 85900 TCAACCACGGCGAAGAGGA 85918
||||||||||||| ||||
Sbjct 1420168 TCAACCACGGCGAGAAGGA 1420186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303890202800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |