Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq290 161 2e-34 seq564 134 3e-26 seq157 104 5e-17 seq119 86.0 1e-11 >seq290 Length=36984 Score = 161 bits (178), Expect = 2e-34 Identities = 293/423 (69%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 281741 CGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTG 281800 ||||||||| || | | | ||||||||| || || || |||||||||| || ||||| Sbjct 6198 CGTGAAGATGTAACGCGGAGACGCGTGGTCCTTGCCGCCTTGCAGCCTCGTGCCGAACTG 6139 Query 281801 ACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGAC 281860 || |||| ||| ||| | ||| |||||||| ||| ||||||| ||||| || Sbjct 6138 CCCGGAAGGCACCAAAAGGTTCACGTTGTTGCTCCCCACGAAATCCTGCGCCAGCCCCAC 6079 Query 281861 GATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACC 281920 ||| || | ||| || | || |||||||| || ||| ||| ||| || || || Sbjct 6078 GATCGTGGACGCAAGGGACGCTTCGCCGTGGTGGTACGCGGAGTGCTCGCTGACGTACCC 6019 Query 281921 ACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAATATAAT-A 281979 |||| ||| || || || | |||| | ||| ||||| ||||| || | | | | | Sbjct 6018 GCTGAGCTGCGCGACTTTGATGTCTTGTTTCAGCTTGCGCTTGAA-GCACGAGAACAGCA 5960 Query 281980 CTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGTCAT 282039 |||| || || || |||||||| || || || || ||||||||||| | || |||| Sbjct 5959 CTTTGCGCTGCGACGGCTTGAACCCGTCCACCACGGACGGAATGCTCCTCAACAAGTCAG 5900 Query 282040 ACCGCGAGAACAAAATAAGTTCCTTGTCAATGAAGTCG-GGAAC--GGGAACCTCGGGCT 282096 || ||||||||||| || || |||| | ||| ||| | || | | |||||| Sbjct 5899 CCCTGGAGAACAAAATCAGCTCTTTGTTCACGAACTCGTCGTACTTGATATCCTCGGCGG 5840 Query 282097 TCTTGTGGTCAAGTTGGTTTCCCGGCTCGTATGCCGTCATCCACTCCTTGCGATCCTCGG 282156 || | |||||| | |||| || ||||| || || | ||||| ||| || |||||| Sbjct 5839 TCAT---GTCAAGGAAGGTTCCGGGTTCGTACGCGGTGAGCCACTTCTTCCGGTCCTCGA 5783 Query 282157 CCC 282159 ||| Sbjct 5782 CCC 5780 >seq564 Length=17261 Score = 134 bits (148), Expect = 3e-26 Identities = 327/484 (68%), Gaps = 16/484 (3%) Strand=Plus/Plus Query 230164 GGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCC 230223 || || || || |||||||| ||| |||| | | ||| | || ||| || | || ||| Sbjct 9108 GGCAAGTCCTTCGCCGAGCGACTCATCGCGTTCGCGTGCATCGAGGGTGTTTTCTTCTCC 9167 Query 230224 GGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTG 230283 ||| |||||| ||||| |||||| || || ||||||| || || | Sbjct 9168 GGGTCGTTCTGCAGCATCTACTGGCTGAAAAAGCGCGGGTTGATGCCCGGGCTGACGTTT 9227 Query 230284 TCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTAT 230343 || |||||| ||||||| |||||||| || || || | | |||| || || | | | Sbjct 9228 TCCAACGAGCTCATCAGCCGCGACGAAGGGCTTCACCGTGATTTCG-CGTGCCTGT---T 9283 Query 230344 TCAAAGCTCCA-GAACAAGCTACCATTCGAGAC---GGTCAAACAAATCATTACAGAAGC 230399 | |||| | |||||| ||| || | ||| || || ||| | | ||||| Sbjct 9284 GTACAGCTACTTGAACAACAAACCGGACGTCGCCGTGGTGAAGCAGATCGTGATGGAAGC 9343 Query 230400 AGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCA-TGTCGCCTTATTGGCATGA 230458 || || | ||||| |||||| | || ||||| | || |||| ||| | ||||||| Sbjct 9344 CGTGGAGATTGAAAAAGAGTTCCTGTGCGACGCACTGCCCGTGTC-CCTGGTGGGCATGA 9402 Query 230459 ACGCTGAACTTATG--GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCA-C 230515 || || || ||| |||| |||||||| ||||| || || | | || ||| || | Sbjct 9403 ACAAAGAGCTGATGTCGGAC--TACATCGAGTTCGTCGCGGATCAC-TTGCTGTGCCAGC 9459 Query 230516 TTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGC 230575 | || || || | |||||| | |||||| || | | ||||||||||| |||| Sbjct 9460 TCGGGCTGGAAAAGGAATACAACACCGCGAACCCGTTCGACTGGATGGAGCTCATCTCGC 9519 Query 230576 TTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGA 230635 ||||||| || |||||||| |||||||| || || | || || |||| | |||| || | Sbjct 9520 TTCAAGGTAAAACCAACTTTTTCGAAAAACGCGTAGGCGAGTACCAGAAGTCTGGCGTCA 9579 Query 230636 TGAA 230639 |||| Sbjct 9580 TGAA 9583 >seq157 Length=13471 Score = 104 bits (114), Expect = 5e-17 Identities = 446/687 (65%), Gaps = 21/687 (3%) Strand=Plus/Plus Query 318985 AGGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATG 319044 ||| | || ||||| || |||| ||||||| |||| |||| ||| || ||| | Sbjct 2883 AGGTTTTCCTTGTCCTCGCCGGTTTGGAAACGCCAGCGGATGTACTCGTTCGGGGTCTTC 2942 Query 319045 TCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTT 319104 || | || | ||||| ||||||||| || ||||| || ||||| || ||||| || Sbjct 2943 TCCAAGTGCTGCTCGACGTGGTGGAACGCGTGCTGCGCGACGTAGGCGTAGCGCATGTTG 3002 Query 319105 GGATGCTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGG 319164 || ||||||||||| | |||||| || || || |||||||| | ||| |||| | Sbjct 3003 GGGTGCTTCCAAACCGTGCCGATGTCGGGCTCGGCTTCGCCCGTGAGGAGCTTGATGAAG 3062 Query 319165 GTGCTTTTCCCCGCACCGTTTTCGCCCA-CCACACCGATCCTGGAGTTCAGCGATACCTG 319223 ||| || || || ||||| ||| | ||| ||| | ||| || || | ||| Sbjct 3063 GTGGACTTGCCAGCGCCGTTGGGGCCGAGGCAC-GCGACGCGCGAGGAGAGGGAGAGCTG 3121 Query 319224 GGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCG 319283 | | | || | | ||| | | ||||| ||| ||| || | || Sbjct 3122 GATACTAGCGCCTCCGATGATCTGCCTGTCCGTGTTCGGGTACGTGTA-GTGGCAGTTGT 3180 Query 319284 TAG-CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGA 319342 | | ||| | || || |||||| | | || || ||||| ||||||| ||||| Sbjct 3181 TCGCCTTGACAATCGCCTTGTCCTTGTTCTTCACGCCTTCCAGGAAACCGGGCTTGGGGA 3240 Query 319343 ACTTCCACGTGGTCTTCGTC-TCGGTAAG---GGCGTAGTAACTCGCTGATTCGGGACGC 319398 | | || || | ||||| | || || || ||| | |||||| |||| | | Sbjct 3241 AAATAAACTTGAGC-TCGTCGTTGGACAGCTCGGTGTACTTCTTCGCTG---CGGGGCAC 3296 Query 319399 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 319458 | | |||||||| || || || ||||| || || || | | |||||| Sbjct 3297 TGGCGGATGAACTCGGTGAGGTTGCCTTTGTAGGTCACGAGTTT---CCTGGTTTCGTAG 3353 Query 319459 TGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCAC 319518 ||||| || ||||| || ||| ||||| |||| |||||| || || |||| || Sbjct 3354 TGGATGATGTGCGTGCACACGCGGTCAAGGAAACCGGCGTCGTGGGAAACGATCATGCTG 3413 Query 319519 GAAA-CGTCCTTAAGGTTGATCAGGTATTCAATCAA-CCACCTCACGTTAGACACAGAAA 319576 |||| ||| || | | |||||| || |||| |||| |||||| ||| | Sbjct 3414 GAAACCGTGGTT-TGCGAGCACAGGTACTC-CTCAAGCCACGCCACGTTTTTCACGTCCA 3471 Query 319577 GATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA- 319635 | |||||||| || ||||| || ||||| | | || |||| || || || || ||| Sbjct 3472 GGTGGTTGGTGGGTTCGTCCAGGAGCAGGATGTCGGCTTTCATGAAGATGGCGCG-GCAC 3530 Query 319636 AGAGCGAGTTTCATTTTCCACCCTCCG 319662 || ||||| |||||||||||||||||| Sbjct 3531 AGCGCGAGCTTCATTTTCCACCCTCCG 3557 >seq119 Length=55923 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317 || |||||||||||| |||||||| ||||||||||||| |||||| ||||||||| |||| Sbjct 30231 CCGTAGCTCAGTTGGCTAGAGCGTGCGACTGTTAATCGCGAGGTCGCCGGTTCGATCCCG 30290 Query 165318 GTTGG 165322 || || Sbjct 30291 GTCGG 30295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057809511447470