Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq520 98.7 8e-16 seq426 96.9 3e-15 seq648 86.0 5e-12 >seq520 Length=32656 Score = 98.7 bits (108), Expect = 8e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||||| ||||| || ||||| || ||||| ||||| || ||||||| ||||| Sbjct 23591 TGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCGTCCTCAAGCTGC 23650 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 |||||||| | || || | ||||||||| ||| | |||||||||||| |||||| Sbjct 23651 TTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTA 23710 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 || || | | ||| || || | |||| |||| ||| |||||||| || || Sbjct 23711 GCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTGATGGTCTTACCCGT 23769 >seq426 Length=55785 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 23811 GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGGGT 23870 ||| |||||||||||| |||| |||||| || | ||||| || || ||| || | Sbjct 4957 GTTCCCCAGGTCGCCGGCGTGGCGCTCCTCGTTGGTGGGCGACCCATGCTTCTTGCCATT 5016 Query 23871 GGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 23930 ||||| |||||| ||| | |||| |||| |||||| ||||||| ||||| ||||| | Sbjct 5017 CGGGTTGAAGTGCGGGCCCGTGGACATGCACCCGTTGGTGGTGTCCCCGAACTCGTGGAT 5076 Query 23931 GTGAAAACCGTGCAGCCC----GCGAGGC 23955 ||| || |||||| ||| ||||||| Sbjct 5077 GTGGAACCCGTGCTTCCCCGCGGCGAGGC 5105 >seq648 Length=41169 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||| | || ||||| |||||||||| || || |||| || ||||| ||||| Sbjct 13539 GTGGATTCCATCTGGATGTTGTAGTCCGCCAACGTGCGGACGTCTTCGAGCTGCCTGCCC 13480 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 | | || || | ||| ||| | ||| | ||||||| |||| |||||| ||| Sbjct 13479 ACGAAGATGAGACGCTGGTGG-CGGGGGGTAAGCCTTCCCTGTCCTGGATCTTCGCCTTC 13421 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | ||| |||| ||| ||||||||||| || ||||| Sbjct 13420 ACGTTGTCGATGGTGTCCGAAGACTCAACCTCCAGGGTGATGGTCTTGCCAGTCAACGTC 13361 Query 21159 TTGACAAATATTTGCATTT 21177 || || || || ||||||| Sbjct 13360 TTCACGAAGATCTGCATTT 13342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422253698622404