Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq520 140 3e-28 seq247 131 2e-25 seq564 111 2e-19 seq648 95.1 1e-14 seq426 84.2 2e-11 >seq520 Length=32656 Score = 140 bits (154), Expect = 3e-28 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 40706 AAACGC--TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AA 40762 |||||| ||||||| || ||||||||| | || || || | | |||| | | | || Sbjct 23779 AAACGCAGTCACGGGTAAGACCATCACCCTGGAGGTGGAGTCTTCGGACACCATCGACAA 23720 Query 40763 CGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCT 40822 || |||||| || || | ||||| || ||||| ||| | |||||||| || ||||||| Sbjct 23719 CG-TCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAGCGTCTCATCT 23661 Query 40823 ACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGG 40882 ||||||||| ||||| || |||| ||||||||| || ||||||||||||||||| Sbjct 23660 TCGCGGGCAAGCAGCTTGAGGACGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAAT 23601 Query 40883 CCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||| ||||| || || ||||| | | || |||||| Sbjct 23600 CCACCCTGCACCTCGTCCTGCGCCTTCGCGGTGGCGGC 23563 >seq247 Length=13427 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 ||||||| || ||||||||| |||| || || | | |||| | | | |||| | ||| Sbjct 6051 TCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGACAACG-TGAAG 6109 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | ||||| | ||||| ||||| |||||| | |||||||| || ||||| | ||||||| Sbjct 6110 GCGAAAATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGCCTCATTTTCGCGGGC 6169 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | ||||| ||| || ||||||||||||||||| ||||||| Sbjct 6170 AAGCAGCTTGAGGATGGCCGCACGCTCGCGGATTACAACATCCAGAAGGAATCCACGCTT 6229 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || ||| | ||| || | || || Sbjct 6230 CACCTGGTGCTCCGCCTGCGCGGAGG 6255 >seq564 Length=17261 Score = 111 bits (122), Expect = 2e-19 Identities = 273/406 (67%), Gaps = 6/406 (1%) Strand=Plus/Plus Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC-GGGCAGT 117085 |||||| |||||| || | || |||||| | ||||||| || ||||| || ||| || Sbjct 9115 CCTTCGCCGAGCGACTCATCGCGTTCGCGTGCATCGAGGGTGTTTTCTTCTCCGGGTCGT 9174 Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 | || || || | ||||| || || ||||| | |||||||| ||||| || |||| Sbjct 9175 TCTGCAGC-ATCTACTGGCTGAAAAAGCGCGGGTTGATGCCCGGGCTGACGTTTTCCAAC 9233 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 ||||||||| | | ||||| || || || | || || || || || ||| || | Sbjct 9234 GAGCTCATCAGCCGCGACGAAGGGCTTCACCGTGATTTCGCGTGCCTGTTGTACAGCTAC 9293 Query 117206 TTGGTGCAGCGACCGAGCG-CGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCAT 117264 ||| | |||| || || || | || | | ||||||| | || || || | || Sbjct 9294 TTGAACAACAAACCGGACGTCGCCGTG-GTGAAGCAGATCGTGATGGAAGCCGTGGAGAT 9352 Query 117265 CGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC 117324 || | ||||| ||| || ||||| ||| ||| |||| | || || Sbjct 9353 TGAAAAAGAGTTCCTGTGCGACGCACTGCCCGTGTCCCTGGTGGGCATGAACAAAGAGCT 9412 Query 117325 GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCT-GGTCGGCGCCA 117383 ||||||| | ||||||||||||||||| || ||||| | |||| || | | | | Sbjct 9413 GATGTCGGACTACATCGAGTTCGTCGCGGATCACTTGCTGTGCCAGCTCGGGCTG-GAAA 9471 Query 117384 AGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 || | |||||||| | |||||| | |||| ||| | |||||||| Sbjct 9472 AGGAATACAACACCGCGAACCCGTTCGACTGGATGGAGCTCATCTC 9517 >seq648 Length=41169 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || ||||| || ||| | || ||||| ||||||||| | || || || | Sbjct 13342 AAATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACCCTGGAGGTTGAGTCTT 13401 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | |||| | |||| || || | |||| || ||| | ||| | | | Sbjct 13402 CGGACACCATCGACAACG-TGAAGGCGAAGATCCAGGACAGGGAAGGCTTACCCCCCG-C 13459 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || ||||||| || ||||| ||||| || |||| ||||| | |||||| Sbjct 13460 CACCAGCGTCTCATCTTCGTGGGCAGGCAGCTCGAAGACGTCCGCACGTTGGCGGACTAC 13519 Query 40867 AACATCCAGAAGGAGGCCACGCT 40889 |||||||||| ||| ||||||| Sbjct 13520 AACATCCAGATGGAATCCACGCT 13542 >seq426 Length=55785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 139360 CGGCCT-GCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACG 139418 |||||| |||||| || |||||| |||||| | ||||||||||| ||| | | ||||| Sbjct 5107 CGGCCTCGCCGCGGGGAA-GCACGGGTTCCACATCCACGAGTTCGGGGACACCACCAACG 5049 Query 139419 GGTGCACGTCGGCCGGCGAGCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACG 139478 |||||| ||| | ||| |||||||||||| || | | || || ||||| | Sbjct 5048 GGTGCATGTCCACGGGCCCGCACTTCAACCCGAATGGCAAGAAGCATGGGTCGCCCACCA 4989 Query 139479 CCGAGATCAGGCACGTCGGCGACCTGGGCAACCTC 139513 |||| | |||| |||||||||||| ||| || Sbjct 4988 ACGAGGAGCGCCACGCCGGCGACCTGGGGAACATC 4954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515212315383440