Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq633 255 1e-62 seq564 98.7 2e-15 >seq633 Length=11014 Score = 255 bits (282), Expect = 1e-62 Identities = 659/998 (66%), Gaps = 17/998 (2%) Strand=Plus/Minus Query 248738 TCGCCGATGACGTCCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTG 248797 |||| |||||||| || |||| || | ||||||| | | | | ||| || ||||| Sbjct 6088 TCGCGGATGACGTGCATGAGATCATCCAAGCCAACGCGGAGCGCTTCGACTCCGAGATTG 6029 Query 248798 ACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATC 248857 |||| | || || || ||||| | ||| | | |||||| ||||||| ||||| | Sbjct 6028 TGTACGACCGCGACTTCGATTACGACTACTTCGGGTACAAAACCCTGGAGAGGTCGTACC 5969 Query 248858 TCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTG 248917 | || |||| ||||| ||||||||||| |||||| || | ||||| || | Sbjct 5968 TGCTGCGCCTTGACGGCAAAATCGTGGAACGGCCCCAGCACCTGCTCATGCGCGTCTCCA 5909 Query 248918 TCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAAC 248977 |||| || |||||||||| | |||| || |||| |||||| | | || || | Sbjct 5908 TCGGCATCCACAAGGATG---TGGAGAACGCCATCGATACGTACCACATGCTCAGCGAGC 5852 Query 248978 GCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGA 249037 |||||||||| || || | || ||||| |||||| |||||| | | ||||| Sbjct 5851 GCTGGATGACGCACGCGTCGCCCACGCTGTTCAACAGCGGTACGCCCCGCCCGCAGCTCT 5792 Query 249038 GCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTA 249097 |||||||| || | |||||| | || ||||| |||| || || || ||||| || | Sbjct 5791 CGTCGTGCTTCCTGATCGCCATGAAGGAGGACTCCATCGAGGGTATCTACGACACCCTGA 5732 Query 249098 AACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCC 249157 | || ||| || || || | ||| ||||| |||||||| ||| || | |||||| Sbjct 5731 AGGAGTGCGCGTGCATCTCAAAGTCCGCCGGCGGTATCGGTCTGTCCATCCACGACATCC 5672 Query 249158 GAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCC 249217 ||| | | ||||||||| || ||||| || | | || ||||| ||| | | Sbjct 5671 GAGGCACCGCGTCGTACATCCGCGGCACAAACGGCACCTCAAACGGCATCGTCCCCATGC 5612 Query 249218 TTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGT 249274 | || || | |||||| ||| | | |||| | |||| || || ||||| Sbjct 5611 TGCGCGTGTTCAACGACACCGCGCGGTACGTGGACCAAGGCGGGGGCAAGCGCAAGGGCG 5552 Query 249275 CGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAA 249334 |||| || || || | ||| ||||||| ||| || || || | || || |||| | Sbjct 5551 CGTTTGCGATCTACCTTGAACCGTGGCACAGCGACATCTTCGACTGGCTCGATTTGAGGA 5492 Query 249335 AGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCG 249394 ||||| ||||||| || | | ||||| ||||| ||||||||||||||| | || Sbjct 5491 AGAACCACGGCAAGGAAGAAGCGCGCGCGCGCGACCTTTTCTACGGCCTGTGGACCAACG 5432 Query 249395 ACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-C 249453 || ||||||||| | || || | ||||||| |||||||| | | ||| ||| Sbjct 5431 ACCTGTTCATGCAGAGGGTGGAGTCAAACGGCGAATGGACGCTGATGTGCCCGAACGAGT 5372 Query 249454 GCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAA 249513 ||||||| ||| ||| || | | ||||| | || | | |||||| Sbjct 5371 GCCCCGG-GCTCGCGGATTGCTGGGGTGAGGCGTTCGAAGAGAAGTACACGGCGTACGAA 5313 Query 249514 TCCAACGGCATCGGC---AAGACAATCAAGGCTCGGACCCTT---TTTGCGAAGGTGGTG 249567 |||| ||| ||||| |||||||| | | |||| ||||||| | | Sbjct 5312 AAAGCGGGCAAAGGCAAGAAGACCATCAAGGCGCAGCTCCTTTGGTTTGCGA---TTCTC 5256 Query 249568 GAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAG 249627 || || || |||| || || || || |||||||||||||||||||| ||| Sbjct 5255 GAATCGCAAGTAGAAACCGGCAACCCCTACATGCTGTTCAAAGACGCGTGCAACCGCAAA 5196 Query 249628 AGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAA 249687 ||||| | | | || ||||| || || ||||| || || || | ||| | || | Sbjct 5195 TCCAACCAGCAGAACCTGGGTACGATTCGGTCGTCGAACCTGTGCACGGAGATCATCGAG 5136 Query 249688 TACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 | | ||||| |||||| | || || |||||||| || Sbjct 5135 TTCACGTCCCCGGAGGAAACCGCGGTGTGCAACCTCGC 5098 >seq564 Length=17261 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | || || ||||||||||| || || || || || || | ||||| Sbjct 9563 GTACTCGCCTACGCGTTTTTCGAAAAAGTTGGTTTTACCTTGAAGCGAGATGAGCTCCAT 9504 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||| ||| |||||| |||| || ||| |||||| |||| ||| Sbjct 9503 CCAGTCGAACGGGTTCGCGGTGTTGTATTCCTTTTCCAGCCCGAGCTGGCACAGCAAGTG 9444 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCAT--GCTCTT 157413 ||||| || |||| |||||| || | ||| |||||| Sbjct 9443 ATCCGCGACGAACTCGATGTAGTCCGACATCAGCTCTT 9406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073751693091392