Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq633 188 6e-43 seq564 145 7e-30 >seq633 Length=11014 Score = 188 bits (208), Expect = 6e-43 Identities = 646/994 (65%), Gaps = 25/994 (3%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| || || || ||||| || || || || ||||||| |||| | || || Sbjct 5089 GCGATGGACGCGAGGTTGCACACCGCGGTTTCCTCCGGGGACGTGAACTCGATGATCTCC 5148 Query 23081 GTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 || || || || | || || ||||| |||| || ||||||| ||| || ||||| Sbjct 5149 GTGCACAGGTT-CGACGACCGAATCGTACCCAGGTTCTGCTGGTTGGATTTGCGGTTGCA 5207 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 || || ||| | |||||||| || |||| || || || ||||| |||| ||||| Sbjct 5208 CGCGTCTTTGAACAGCATGTAGGGGTTGCCGGTTTCTACTTGCGATTCGAGAATCGCAAA 5267 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCT--GCCTTCTTCCTCGTACTTTTGG 23257 ||| | ||| || | | ||| | | ||| ||| ||| |||||| | Sbjct 5268 CCAAAGGAGCTGCGCCTTGATG-GTCTT-CTTGCCTTTGCCCGCTTTTTCGTACGCCGTG 5325 Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317 ||| | | || || | |||| | || || || || ||||| | | |||| ||| Sbjct 5326 TACTTCTCTTCGAACGCCTCACCCCAGCAATCCGCGAGCCCGGGGCACTCGTTCGGGCAC 5385 Query 23318 ATGAGACTCCACATTGAGTCATTT---TCAACGCGTCT-CATAAAAAGATCCGGTATCCA 23373 || || |||| | | | ||| || || | ||| ||| || || || |||| Sbjct 5386 ATCAGCGTCCA---TTCGCCGTTTGACTCCACCC-TCTGCATGAACAGGTCGTTGGTCCA 5441 Query 23374 TAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATC 23433 || ||||||| || ||||| |||||| | || || |||||| |||||| ||||||| Sbjct 5442 CAGGCCGTAGAAAAGGTCGCGCGCGCGCGCTTCTTCCTTGCCGTGGTTCTTCCTCAAATC 5501 Query 23434 CAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCT 23493 | |||| || | ||| |||||||| || ||||| | |||||||||||| | Sbjct 5502 GAGCCAGTCGAAGATGTCGCTGTGCCACGGTTCAAGGTAGATCGCAAACGCGCCCTTGCG 5561 Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||| ||||| || || ||||| || || |||| |||| |||| | ||||| || || Sbjct 5562 CTTGCCCCCGCCTTGGTCCACGTACCGCGCGGTGTCGTTGAACACGCGCAGCATGGGGAC 5621 Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTG 23613 || ||||| || | |||| | ||| | ||| | | |||| | || ||| Sbjct 5622 GATGCCGTTTGAGGTGCCGTTTGTGCCGCGGATGTACGACGCGGTGCCTCGGATGTCGTG 5681 Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673 | | | ||| || || ||| | || || || || |||||| | ||||| ||||| Sbjct 5682 GATGGACAGACCGATACCGCCGGCGGACTTTGAGATGCACGCGCACTCCTTCAGGGTGTC 5741 Query 23674 GTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGC 23733 |||||| ||||||||| |||||| || | |||| || ||| ||||| || | |||| Sbjct 5742 GTAGATACCCTCGATGGAGTCCTCCTTCATGGCGATCAGGAAGCACGACGAGAGCTGCGG 5801 Query 23734 TTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCA---TTCG- 23789 ||||||| || |||||| || || |||||||| ||||| ||| Sbjct 5802 GCGGGGCGTACCGCTGTTGAACAGCGTGGGCGACGCGTGCGT----CATCCAGCGCTCGC 5857 Query 23790 ACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGA 23849 | | | |||||| ||||||||| || | |||| ||| || ||||||| || Sbjct 5858 TGAGCATGTGGTACGTATCGATGGCGTTCTCCACATCCT---TGTGGATGCCGATGGAGA 5914 Query 23850 CGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATG 23909 ||||||| | || || || || | || || | ||||| || | ||| || | Sbjct 5915 CGCGCATGAGCAGGTGCTGGGGCCGTTCCACGATTTTGCCGTCAAGGCGCAGCAGGTACG 5974 Query 23910 AACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGG 23969 | | | || ||||| | || || ||||| || | ||||| || |||| ||| || Sbjct 5975 ACCTCTCCAGGGTTTTGTACCCGAAGTAGTCGTAATCGAAGTCGCGGTCGTACACAATCT 6034 Query 23970 CCGAATTCAAACGGTACGCATTGGCAGCGATGAT 24003 | || | || || | ||| ||||| |||||| Sbjct 6035 CGGAGTCGAAGCGCTCCGCGTTGGCTTGGATGAT 6068 Score = 120 bits (132), Expect = 3e-22 Identities = 304/454 (67%), Gaps = 15/454 (3%) Strand=Plus/Plus Query 22147 GCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGT 22206 ||| || || ||||| ||||||||||| ||| ||||||| ||||| || || | ||||| Sbjct 4146 GCGCAGGTAGTACATCCCCGTCTTCAGCCCCTTCTTCCAGGCGTAGAAGTGCAGGGACGT 4205 Query 22207 CAATTTTCCATAACTCGGCAAGTCC---ATGTACACATTGAACGACTGACTCTGATCGAT 22263 | || || ||| |||| |||| ||| ||||| ||||| || || ||||| Sbjct 4206 GAGCTTCCCCGCGTTCGC---GTCCGACATGTGCACGTTGAAGGACTGGCTTTGGTCGAT 4262 Query 22264 AAACGCTCCTCGATCGGCGGCCATATTTATCAATGTA--CGCATCGACATTTCCCATACG 22321 ||||| ||||| ||||||||||| | | ||| | | ||| | |||||||| ||| Sbjct 4263 GAACGCGCCTCGGTCGGCGGCCATGTCCA-CAA-GCACGCGCTGCTTGATTTCCCACACG 4320 Query 22322 GTCTTGTACAGTTGCC-TGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTT 22380 || ||||| | | ||| ||| || || || || | | || ||| ||||| Sbjct 4321 GTTTTGTA-AATCGCCTTGAGTTCCTCGGGGAT---GTCCAGGCCTTGCACGCTGCCGTT 4376 Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTT 22440 ||| |||| || || | | || |||||| || | | |||||||| Sbjct 4377 GTTGGAGATGAGGTCGTTCTTGAGTGAGGGGTCCCACAACCCTAGTTCCGTCAAATCCGA 4436 Query 22441 GACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTT 22500 | || || ||||||||| ||||| ||||| | || || | ||| ||||| Sbjct 4437 AAGAAGGTGGTTGTTCACCACGGTGAACTCTCCGGAAAGCACCCGTCTGGCGTAGATGTT 4496 Query 22501 GGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGG 22560 | ||| | |||||||| | || ||||| ||||| || || | ||||| ||||| || Sbjct 4497 GCTGGTGTAGGGTTCGAAGCACTCGTTGTTGCCCAGGATTTGCGACGTCGACGCGGTGGG 4556 Query 22561 CATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCG 22594 ||| || |||| || |||||||| | || |||| Sbjct 4557 CATGGGAGCCACGAGAAGCGAGTTCCGCACGCCG 4590 >seq564 Length=17261 Score = 145 bits (160), Expect = 7e-30 Identities = 321/472 (68%), Gaps = 12/472 (3%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT-TTCGGGCAGCTT 58021 ||||||||| | || ||||||||||| | |||| ||| | ||||| | |||| | | Sbjct 9117 TTCGCCGAGCGACTCATCGCGTTCGCGTGCATCGAGGGTGTTTTCTTCTCCGGGTCGTTC 9176 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||| || || | ||| |||| || ||||| |||||||||| ||||||||| |||||| Sbjct 9177 TGCAGC-ATCTACTGGCTGAAAAAGCGCGGGTTGATGCCCGGGCTGACGTTTTCCAACGA 9235 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141 | | || |||||||| || || || |||||| |||||||| ||||| || | Sbjct 9236 GCTCATCAGCCGCGACGAAGGGCTTCACCGTGATTTCGCGTGCCTGTTGTACAGCTACTT 9295 Query 58142 TGTCAATAAACC-GACG-CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATC 58199 ||| ||||| |||| || | | | | | || | | || || || | ||| Sbjct 9296 GAACAACAAACCGGACGTCGCCGTGG--TGAAGCAGATCGTGATGGAAGCCGTGGAGATT 9353 Query 58200 GAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTG 58259 ||||| ||||| | ||| || || || ||| || || | || |||||||| || || Sbjct 9354 GAAAAAGAGTTCCTGTGCGACGCACTGCCCGTGTCCCTGGTGGGCATGAACAAAGAGCTG 9413 Query 58260 ATGTCAAAGTACATTGAGTTTGTTGCCGACAGACT---TTTGCTCGAACTGATTGGAGAG 58316 ||||| | ||||| ||||| || || || ||| | ||| | | | |||| | Sbjct 9414 ATGTCGGACTACATCGAGTTCGTCGCGGA-TCACTTGCTGTGCCAGCTCGGGCTGGAAAA 9472 Query 58317 CGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAG 58376 | | |||||||| || ||||| || | ||| | || |||||||| | || || Sbjct 9473 GG--AATACAACACCGCGAACCCGTTCGACTGGATGGAGCTCATCTCGCTTCAAGGTAAA 9530 Query 58377 ACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGA 58428 || ||||||||||||||| || |||| || || || | ||||| |||| Sbjct 9531 ACCAACTTTTTCGAAAAACGCGTAGGCGAGTACCAGAAGTCTGGCGTCATGA 9582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760443446480