Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq426 89.7 4e-13 seq247 82.4 6e-11 >seq426 Length=55785 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 21137 GGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGT 21196 ||| ||| ||||| |||||| |||| ||||| || | ||| | || || || | | Sbjct 4953 GGATGTTCCCCAGGTCGCCGGCGTGGCGCTCCTCGTTGGTGGGCGACCCATGCTTCTTGC 5012 Query 21197 GCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 | ||||| |||||| ||| | |||| |||| |||||| ||||||| |||||||||| Sbjct 5013 CATTCGGGTTGAAGTGCGGGCCCGTGGACATGCACCCGTTGGTGGTGTCCCCGAACTCGT 5072 Query 21257 GAACGTGAAAGCCGTGCAGTCCGCGCGGC 21285 | | ||| || |||||| ||| |||||| Sbjct 5073 GGATGTGGAACCCGTGC-TTCCCCGCGGC 5100 >seq247 Length=13427 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||||| ||| | ||| || ||||| || || ||||||||||| Sbjct 6255 CCTCCGCGCAGGCGGAGCACCAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCG 6196 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| || ||||| |||| || | |||||| || ||| Sbjct 6195 AGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCAGGGGGG 6136 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| |||||| || || | | ||| || || || |||| Sbjct 6135 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACC 6076 Query 18995 TCGACGGTAATGGTTTTACCTGT 19017 |||| ||| ||||| ||||| || Sbjct 6075 TCGAGGGTGATGGTCTTACCCGT 6053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414567398764186