Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq564 113 4e-20 seq520 107 2e-18 seq426 95.1 1e-14 seq247 91.5 1e-13 >seq564 Length=17261 Score = 113 bits (124), Expect = 4e-20 Identities = 248/362 (69%), Gaps = 15/362 (4%) Strand=Plus/Plus Query 46240 ATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGAC 46299 |||||||| ||||||||| ||||||||| || |||||||| || || || || Sbjct 9210 ATGCCCGGGCTGACGTTTTCCAACGAGCTCATCAGCCGCGACGAAGGGCTTCACCGTGAT 9269 Query 46300 TTTGCGTGTCTCTACTATAAC-ACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCT 46358 || ||||| || | || | | ||| || || |||| | || || | ||||| | Sbjct 9270 TTCGCGTGCCTGTTGTACAGCTACT----TGAACAACAAAC---CGGACGTCGCCGTGGT 9322 Query 46359 GA-GCATGT--TCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCC 46415 || ||| | | | ||| || |||| ||||| || ||||| | | ||||||||| Sbjct 9323 GAAGCAGATCGTGATGGAAGCCGTGGAGATTGAAAAAGAGTTCCTGTGCGACGCACTGCC 9382 Query 46416 CGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGA 46475 || ||||| ||||||||||| | || |||| |||||||||||||| || ||||| Sbjct 9383 CGTGTCCCTGGTGGGCATGAACAAAGAGCTGATGTCGGACTACATCGAGTTCGTCGCGGA 9442 Query 46476 CCGACTGCTCGTG-CAGCTTCACCAGCCGAAGCATTTTCAC-GCGCGCAATCCATTTGAG 46533 | |||| ||| ||||| | | ||| | | || |||| || || || || Sbjct 9443 TCACTTGCT-GTGCCAGCTCGGGCTGGAAAAGGAATACAACACCGCG-AACCCGTTCGAC 9500 Query 46534 TTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAG 46593 | ||| | |||||| || | || ||||| || ||||||||||| ||||| |||||| Sbjct 9501 TGGATGGAGCTCATCTCGCTTCAAGGTAAAACCAACTTTTTCGAAAAACGCGTAGGCGAG 9560 Query 46594 TA 46595 || Sbjct 9561 TA 9562 >seq520 Length=32656 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||||| || | || | ||| || ||||| || ||||||||||| Sbjct 23566 GCCACCGCGAAGGCGCAGGACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGC 23625 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 23626 GAGGGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGG 23685 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | || | || || | ||||| | Sbjct 23686 AATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 23745 Query 131187 GTCGACGGTAACGGTTTTACCGGT 131210 || | ||| | ||| ||||| || Sbjct 23746 CTCCAGGGTGATGGTCTTACCCGT 23769 >seq426 Length=55785 Score = 95.1 bits (104), Expect = 1e-14 Identities = 110/147 (75%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 51808 ATGTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTGGTGTTTGCCA 51867 ||||| || || ||||| |||| ||||| || | |||| | || || | |||||| Sbjct 4955 ATGTTCCCCAGGTCGCCGGCGTGGCGCTCCTCGTTGGTGGGCGACCCATGCTTCTTGCCA 5014 Query 51868 AGGGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGCCGAACTCGTGC 51927 || || |||||| ||| | |||| ||||||||||| ||||||| ||||||||||| Sbjct 5015 TTCGGGTTGAAGTGCGGGCCCGTGGACATGCACCCGTTGGTGGTGTCCCCGAACTCGTGG 5074 Query 51928 ACGTGAAAGCCGTGCAGTCCGCGCGGC 51954 | ||| || |||||| ||| |||||| Sbjct 5075 ATGTGGAACCCGTGC-TTCCCCGCGGC 5100 >seq247 Length=13427 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| || ||||| | || | || || ||||| || ||||||||||| Sbjct 6255 CCTCCGCGCAGGCGGAGCACCAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCG 6196 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| | || | ||||||||||| || ||| Sbjct 6195 AGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCAGGGGGG 6136 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||||||| ||| | | || | || || | ||||| | Sbjct 6135 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACC 6076 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| ||||| || Sbjct 6075 TCGAGGGTGATGGTCTTACCCGT 6053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472006492728960