Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq520 105 6e-18 seq247 102 7e-17 seq633 82.4 6e-11 >seq520 Length=32656 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||| || |||| || || ||||| | | || ||| | ||| | |||| Sbjct 23769 ACGGGTAAGACCATCACCCTGGAGGTGGAGTCTTCGGACACCATCGACAACGTCAAGGCT 23710 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || ||||| ||||| || || ||||| || || || ||||| Sbjct 23709 AAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCGGGCAAG 23650 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||||||| || | ||||||||||| || || ||||||||| | || Sbjct 23649 CAGCTTGAGGACGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAATCCACCCTGCAC 23590 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || |||| | ||||| || Sbjct 23589 CTCGTCCTGCGCCTTCGCGGTGG 23567 >seq247 Length=13427 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||| || |||| || || ||||| | | || ||| | ||| | | || Sbjct 6053 ACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGACAACGTGAAGGCG 6112 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| || |||||||||||||| || || || || || || || || || || ||||| Sbjct 6113 AAAATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGCCTCATTTTCGCGGGCAAG 6172 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| || | ||||||||||| || || |||||||| | || Sbjct 6173 CAGCTTGAGGATGGCCGCACGCTCGCGGATTACAACATCCAGAAGGAATCCACGCTTCAC 6232 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || ||||||||||| Sbjct 6233 CTGGTGCTCCGCCTGCGCGGAGGT 6256 >seq633 Length=11014 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/139 (73%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 130114 TCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTGCCC 130173 ||| | |||||| |||||||||||||| || || || | |||||||| || |||||| Sbjct 5509 TCGAAGATGTCGCTGTGCCACGGTTCAAGGTAGATCGCAAACGCGCCCTTGCGCTTGCCC 5568 Query 130174 ---CCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCG 130230 |||||||| |||| ||| ||| | |||| | || |||| ||| | | | ||| Sbjct 5569 CCGCCTTGGTCCACGTACCGCGCGGTGTCGTTGAACACGCGCAGCATGGGGACGATGCCG 5628 Query 130231 TTGGCCGTGCCGTTTGTGC 130249 || | ||||||||||||| Sbjct 5629 TTTGAGGTGCCGTTTGTGC 5647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419722531599985