Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq290 134 3e-26 seq648 111 4e-19 seq247 109 1e-18 >seq290 Length=36984 Score = 134 bits (148), Expect = 3e-26 Identities = 401/614 (65%), Gaps = 10/614 (2%) Strand=Plus/Minus Query 325121 ACGATGTCTTTAGGGTTGTAACTGGGAATGTTCGTCGACCATCCGGTTCCGATACCACTC 325180 |||||||| | |||||||| ||||||| ||| ||||| || || |||||||| | Sbjct 6392 ACGATGTCCCTTGGGTTGTAGTTGGGAATCGACGTTGACCAGCCCGTGCCGATACCTTCC 6333 Query 325181 GATCCATTCACCAGGATACTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTATCG 325240 | || ||||||| | ||| |||| || | || | ||| |||||||| | | Sbjct 6332 GCGCCGTTCACCAACAACAGCGGCATAATTGGGAGGTAGTGCTCGGGTTCGATAACCTGG 6273 Query 325241 CCGTCGTCGTACATATATTTCAGAAGATTGTCGTCCGTATCGACGAAAACCTGTCGAGTC 325300 || || || | | || | || | | |||||| ||| ||| | || || | | Sbjct 6272 CCATCCTCATCAAGGTAATCCAACAAAGCGTCGTCGCACTCGGGGAAGA--TGGCGCGGC 6215 Query 325301 TGA--GGGTTCAGTTTCatatatatatatCGTGCACTCGCGTGATCCTTACCACCCTGCA 325358 | || || | | | || || || | | |||||| ||||| || || |||| Sbjct 6214 AAATAGGCGCCAAACGCGTGAAGATGTAACGCGGAGACGCGTGGTCCTTGCCGCCTTGCA 6155 Query 325359 ATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAAT 325418 |||| |||||||| || |||| ||| ||| | ||| ||||| || || ||| Sbjct 6154 GCCTCGTGCCGAACTGCCCGGAAGGCACCAAAAGGTTCACGTTGTTGCTCCCCACGAAAT 6095 Query 325419 CCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTAT 325478 |||| || || |||||| || || || |||||||| ||||| || ||| | Sbjct 6094 CCTGCGCCAGCCCCACGATCGTGGACGCAAGGGACGCTTCGCCGTGGTGGTACGCGGAGT 6035 Query 325479 GCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGA 325538 |||| ||||| ||||||| ||| || || || | ||| ||| |||||||||| Sbjct 6034 GCTCGCTGACGTACCCGCTGAGCTGCGCGACTTTGATGTCTTGTTTCAGCTTGCGCTTGA 5975 Query 325539 AAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGC 325598 | || | | |||||| || || || || ||||| || || || || |||||||||| Sbjct 5974 AGCACGAGAACAGCACTTTGCGCTGCGACGGCTTGAACCCGTCCACCACGGACGGAATGC 5915 Query 325599 TTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCG-GGAAC- 325656 | | || || || ||||||||||| || || |||| | ||| ||| | || Sbjct 5914 TCCTCAACAAGTCAGCCCTGGAGAACAAAATCAGCTCTTTGTTCACGAACTCGTCGTACT 5855 Query 325657 -GGGAACCTCGGGCTTCTTGTGGTCAAGTTGATTTCCTGGTTCGTATGCCGTCATCCACT 325715 | | |||||| || | |||||| |||| |||||||| || || | ||||| Sbjct 5854 TGATATCCTCGGCGGTCAT---GTCAAGGAAGGTTCCGGGTTCGTACGCGGTGAGCCACT 5798 Query 325716 CCTTGCGATCCTCG 325729 ||| || |||||| Sbjct 5797 TCTTCCGGTCCTCG 5784 >seq648 Length=41169 Score = 111 bits (122), Expect = 4e-19 Identities = 162/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| ||| || || | | |||| ||| | ||||| || ||||| || Sbjct 13569 CCACCGCGGAGGGAAAGCACCAGGTCGAGCGTGGATTCCATCTGGATGTTGTAGTCCGCC 13510 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||| ||||||| | || | || ||||||| |||||||| || | || Sbjct 13509 AACGTGCGGACGTCTTCGAGCTGCCTGCCCACGAAGATGAGACGCTGGTG-GCGGGGGGT 13451 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 | ||||| | |||||||| ||||| |||||||| || || | || || || || Sbjct 13450 AAGCCTTCCCTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCAACC 13391 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| ||||| || |||| ||||| ||||| ||||||||| Sbjct 13390 TCCAGGGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCATT 13343 >seq247 Length=13427 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || || |||| |||| ||| || ||||| || || || ||| Sbjct 6255 CCTCCGCGCAGGCGGAGCACCAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCG 6196 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || ||||| || || ||||| || | ||| Sbjct 6195 AGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCAGGGGGG 6136 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||||||||| |||||||| || || | || || || || Sbjct 6135 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACC 6076 Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449 ||||| ||||| ||||| || || Sbjct 6075 TCGAGGGTGATGGTCTTACCCGT 6053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179638242789782