Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq290 136 9e-27 seq564 127 5e-24 >seq290 Length=36984 Score = 136 bits (150), Expect = 9e-27 Identities = 282/417 (68%), Gaps = 6/417 (1%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 ||||| || || || | | |||||| ||||| || || |||| |||| |||||||| Sbjct 6197 GTGAAGATGTAACGCGGAGACGCGTGGTCCTTGCCGCCTTGCAGCCTCGTGCCGAACTGC 6138 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || |||| ||| ||| | ||| ||||| || || ||||||| || || |||| Sbjct 6137 CCGGAAGGCACCAAAAGGTTCACGTTGTTGCTCCCCACGAAATCCTGCGCCAGCCCCACG 6078 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 || || || || |||||||| ||||| || ||| ||||| ||||| ||| Sbjct 6077 ATCGTGGACGCAAGGGACGCTTCGCCGTGGTGGTACGCGGAGTGCTCGCTGACGTACCCG 6018 Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACT 297676 |||| ||| || || || | ||| ||| ||||||||||| || | | |||| Sbjct 6017 CTGAGCTGCGCGACTTTGATGTCTTGTTTCAGCTTGCGCTTGAAGCACGAGAACAGCACT 5958 Query 297677 TTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTAC 297736 || || || || || ||||| || || || || ||||||||||| | || || | Sbjct 5957 TTGCGCTGCGACGGCTTGAACCCGTCCACCACGGACGGAATGCTCCTCAACAAGTCAGCC 5898 Query 297737 CGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCG-GGAAC--GGGAACCTCGGGCTTC 297793 | ||||||||||| || || |||| | ||| ||| | || | | |||||| || Sbjct 5897 CTGGAGAACAAAATCAGCTCTTTGTTCACGAACTCGTCGTACTTGATATCCTCGGCGGTC 5838 Query 297794 TTGTGGTCAAGTTGATTTCCTGGTTCGTATGCCGTCATCCACTCCTTGCGATCCTCG 297850 | |||||| |||| |||||||| || || | ||||| ||| || |||||| Sbjct 5837 AT---GTCAAGGAAGGTTCCGGGTTCGTACGCGGTGAGCCACTTCTTCCGGTCCTCG 5784 >seq564 Length=17261 Score = 127 bits (140), Expect = 5e-24 Identities = 307/455 (67%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 243279 CGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTC 243338 ||| || || || || ||||| ||| |||| | | |||| | || ||| || | || || Sbjct 9107 CGGCAAGTCCTTCGCCGAGCGACTCATCGCGTTCGCGTGCATCGAGGGTGTTTTCTTCTC 9166 Query 243339 CGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCT 243398 |||| |||||| ||||| |||||| || || ||||||| || || | Sbjct 9167 CGGGTCGTTCTGCAGCATCTACTGGCTGAAAAAGCGCGGGTTGATGCCCGGGCTGACGTT 9226 Query 243399 GTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGT 243457 || |||||| ||||||| |||||||| || ||||||| | |||| ||| || ||| Sbjct 9227 TTCCAACGAGCTCATCAGCCGCGACGAAGGGCTTCACCGTGATTTCGCGTGC-CTGTTGT 9285 Query 243458 ATTCAAAGCTCCA-GAACAAGCTACCATTCGAAAC---GGTCAAACAAATCATCACAGAA 243513 | |||| | |||||| ||| || | ||| || || ||| | | ||| Sbjct 9286 AC----AGCTACTTGAACAACAAACCGGACGTCGCCGTGGTGAAGCAGATCGTGATGGAA 9341 Query 243514 GCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA-TGCCGGCTTATTGGCAT 243572 || || || | ||||| || ||| | |||||||| | || || | || | ||||| Sbjct 9342 GCCGTGGAGATTGAAAAAGAGTTCCTGTGCGACGCACTGCCCGTGTCC-CTGGTGGGCAT 9400 Query 243573 GAACTCTGAACTCATG--GGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCG 243630 |||| || || ||| |||| |||||||| ||||| || || | | | | | | Sbjct 9401 GAACAAAGAGCTGATGTCGGAC--TACATCGAGTTCGTCGCGGATCACTTGCTGTGCCAG 9458 Query 243631 CTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCG 243690 || || || || | |||||| || |||||| || | || ||||||||||| ||| Sbjct 9459 CTCGGGCTGGAAAAGGAATACAACACCGCGAACCCGTTCGACTGGATGGAGCTCATCTCG 9518 Query 243691 CTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 |||||||| ||||| ||||| |||||||| || || Sbjct 9519 CTTCAAGGTAAAACCAACTTTTTCGAAAAACGCGT 9553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102864894335150