Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq520 93.3 5e-14 seq247 89.7 6e-13 >seq520 Length=32656 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 23603 TCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAG 23662 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||||| || | || ||||||||| ||| || |||| ||| Sbjct 23663 ATGAGACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGTT 23721 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | | | ||||| || ||||| || | |||||||| || ||||| Sbjct 23722 GTCGATGGTGTCCGAAGACTCCACCTCCAGGGTGATGGTCTTACCCGT 23769 >seq247 Length=13427 Score = 89.7 bits (98), Expect = 6e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||| || || || || | || || |||||||| || ||||| Sbjct 6219 TCCTTCTGGATGTTGTAATCCGCGAGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCGAAA 6160 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | | |||||||||| |||||| || | ||| Sbjct 6159 ATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATTTTCGCCTTCA-CGTT 6101 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | | | ||||| || ||||| |||| |||||||| || ||||| Sbjct 6100 GTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGT 6053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543205541318960