Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq247 116 4e-21 seq520 109 5e-19 seq633 82.4 8e-11 >seq247 Length=13427 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| || |||| ||| ||||| || || ||||||||||| || Sbjct 6256 ACCTCCGCGCAGGCGGAGCACCAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGC 6197 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || |||||||||||||| || ||||||| ||||||||||| || || Sbjct 6196 GAGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCAGGGGG 6137 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || ||||| Sbjct 6136 GATACCCTCCTTGTCCTGGATTTT 6113 >seq520 Length=32656 Score = 109 bits (120), Expect = 5e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| |||| |||||| |||| |||||||||||||| Sbjct 23597 GTGGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCC 23656 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || | ||||| |||||||||||||| ||||| ||||| || || || || || Sbjct 23657 GCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 23709 >seq633 Length=11014 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 153803 CACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAA 153862 |||||| || |||||||| || |||||||| ||||| || ||||| |||||||| | ||| Sbjct 4236 CACGTTGAAGGACTGGCTTTGGTCGATGAACGCGCCTCGGTCGGCGGCCATGTCCA-CAA 4294 Query 153863 GTTTTTACTGCTC-ATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATG 153920 | ||||| ||||||||||| |||||||| | || || | || ||||| ||| Sbjct 4295 GCACGCGCTGCTTGATTTCCCACACGGTTTTGTAAATCGCCTTGAGTTCCTCGGGGATG 4353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499638123496360