Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq633 185 9e-42 seq564 113 4e-20 seq426 86.0 6e-12 >seq633 Length=11014 Score = 185 bits (204), Expect = 9e-42 Identities = 567/861 (66%), Gaps = 38/861 (4%) Strand=Plus/Plus Query 153684 CCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 153743 |||| || ||||| ||| |||||| ||||||||||||||||| |||||||| || | Sbjct 5176 CCCAGGTTCTGCTGGTTGGATTTGCGGTTGCACGCGTCTTTGAACAGCATGTAGGGGTTG 5235 Query 153744 CCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGC 153800 ||||| || ||||||| ||||| || ||||| | | || |||||| | | Sbjct 5236 CCGGTTTCTACTTGCGATTCGAGAATCGCAAACCAAAGGAG---CTGCGCCTTGATGGTC 5292 Query 153801 TGCCGATAGCG---GCCCTCGCTCTCGTATCGCTCGTACAGTCGCT-CAAACTCGTCGCC 153856 | | | || |||| | | ||||| | |||| || || | ||| | || || Sbjct 5293 TTC---TTGCCTTTGCCCGCTTTTTCGTACGCCGTGTACT-TCTCTTCGAACGCCTCACC 5348 Query 153857 GTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGC 153916 |||| || ||||| ||||| |||| | ||| |||||||||| ||| ||| | Sbjct 5349 CCAGCAATCCGCGAGCCCGGGGCACTCGTTCGGGCACATCAGCGTCCATTCGCCGTTTGA 5408 Query 153917 GTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGC-CT 153975 | || | |||||||||| || ||| || |||| | ||||||||||| | Sbjct 5409 CTCCACCCTCTGCATGAACAGGTCGTTGGTCCACAGGCCGTAGAAAAGGTCGCGCGCGCG 5468 Query 153976 TGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCC 154035 || || ||| ||| ||| ||| || |||| | |||||||| ||||| Sbjct 5469 CGCT-TCTTCCTTGCCGTGGTTCTTCCTCAAATCGAGCCAGTCGAAGATGTCGCTGTGCC 5527 Query 154036 AGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTTCC---GCCCTGATCGACGTGGC 154092 | ||||||| ||||| || | || || || ||||| || ||| || || |||| | Sbjct 5528 ACGGTTCAAGGTAGATCGCAAACGCGCCCTTGCGCTTGCCCCCGCCTTGGTCCACGTACC 5587 Query 154093 GCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT-- 154150 || | | | |||||| ||||||| |||||| | | |||| ||| ||||||||| || Sbjct 5588 GCGCGGTGTCGTTGAACACGCGCAGCATGGGGACGATGCCGTTTGAGGTGCCGTTTGTGC 5647 Query 154151 --CGAATTGATCTTGC--TGCCGCGGGCG-CGCACTTGATGCACGTTAACGCCAATGCCG 154205 || || | || |||| ||| | || | |||| || | || || ||| Sbjct 5648 CGCGGATGTACGACGCGGTGCCTCGGATGTCG---TGGATGGAC----AGACCGATACCG 5700 Query 154206 CCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTA 154265 ||| || ||||||| ||| ||||| || ||| || |||||| || |||||| Sbjct 5701 CCGGCGGACTTTGAGATGCACGCGCACTCCTTCAGGGTGTCGTAGATACCCTCGATGGAG 5760 Query 154266 TCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAA 154325 || || | | ||| || ||| ||||| | | ||||| | |||| || || | Sbjct 5761 TCCTCCTTCATGGCGATCAGGAAGCACGACGAGAGCTGCGGGCGGGGCGTACC-GCTGTT 5819 Query 154326 -AAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGAT 154384 || || ||||| ||||||||| | | | ||| | |||| ||||||| ||||| Sbjct 5820 GAACAGCGTGGGCGACGCGTGCGTCATCCAGCGCTCGCTGAGCATGTGGTACGTATCGAT 5879 Query 154385 GGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGG 154444 ||||| || | ||| | | || ||||||| | |||||||||||||| |||||| || Sbjct 5880 GGCGTTCTCCACATCCTTG---TGGATGCCGATGGAGACGCGCATGAGCAGGTGCTGGGG 5936 Query 154445 ACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACC 154504 ||||| ||| | | ||||| || || || | || ||||||||||| || Sbjct 5937 CCGTTCCACGATTTTGCCGTCAAGGCGCAGCAGGTACGACCTCTCCAGGGTTTTGTACCC 5996 Query 154505 GAAATACTTGTATTCAAAATC 154525 ||| || | ||| || || || Sbjct 5997 GAAGTAGTCGTAATCGAAGTC 6017 >seq564 Length=17261 Score = 113 bits (124), Expect = 4e-20 Identities = 246/361 (68%), Gaps = 13/361 (4%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 |||||||| |||||||| ||||||| | || ||||||||||| || ||| || Sbjct 9210 ATGCCCGGGCTGACGTTTTCCAACGAGCTCATCAGCCGCGACGAAGGGCTTCACCGTGAT 9269 Query 52542 TTTGCGTGCCTCTACTACAAGACGCG-CGTGACCGAAAAATTGGATTCGGACACGATCCT 52600 || |||||||| | |||| || | ||| | | ||| ||| | | | | | Sbjct 9270 TTCGCGTGCCTGTTGTACA----GCTACTTGAACAACAAACCGGAC---GTCGCCGTGGT 9322 Query 52601 GA-GCATGT--TCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCC 52657 || ||| | | | ||| || |||| || ||||| ||||| | | ||| ||||| Sbjct 9323 GAAGCAGATCGTGATGGAAGCCGTGGAGATTGAAAAAGAGTTCCTGTGCGACGCACTGCC 9382 Query 52658 GGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGA 52717 || ||| ||||||||||| || |||| || ||||||||||| || ||||| Sbjct 9383 CGTGTCCCTGGTGGGCATGAACAAAGAGCTGATGTCGGACTACATCGAGTTCGTCGCGGA 9442 Query 52718 TCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGC-AATCCGTTTGAGT 52776 || || || |||||||||| | |||| | | |||| | ||| || ||||| || | Sbjct 9443 TCACTTGCTGTGCCAGCTCGGGCTGGAAAAGGAATACAACAC-CGCGAACCCGTTCGACT 9501 Query 52777 TTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGT 52836 ||| | ||| |||||| | || || |||||||||||||| || || || ||||||| Sbjct 9502 GGATGGAGCTCATCTCGCTTCAAGGTAAAACCAACTTTTTCGAAAAACGCGTAGGCGAGT 9561 Query 52837 A 52837 | Sbjct 9562 A 9562 >seq426 Length=55785 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/139 (75%), Gaps = 6/139 (4%) Strand=Plus/Plus Query 57306 GACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGG-GAGCG--CCGTGTTCGCT 57362 || ||| |||| ||||||| |||| ||| | | |||||| | ||| || || | | Sbjct 4954 GATGTTCCCCAGGTCGCCGGCGTGGCGCTC---CTCGTTGGTGGGCGACCCATGCTTCTT 5010 Query 57363 GCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAACTC 57422 ||| | ||||| |||||| ||||| ||| |||| |||||| ||||||| |||||||| Sbjct 5011 GCCATTCGGGTTGAAGTGCGGGCCCGTGGACATGCACCCGTTGGTGGTGTCCCCGAACTC 5070 Query 57423 GTGAACGTGAAATCCGTGC 57441 ||| | ||| || |||||| Sbjct 5071 GTGGATGTGGAACCCGTGC 5089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496255768693680