Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq247 100 3e-16 seq564 98.7 9e-16 seq633 86.0 6e-12 seq426 84.2 2e-11 >seq247 Length=13427 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||| || | ||| || || || || || |||||||| | Sbjct 6255 CCTCCGCGCAGGCGGAGCACCAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCG 6196 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| | || | |||||||| || || || Sbjct 6195 AGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCAGGGGGG 6136 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||||||| ||| | |||| |||| |||||||| | ||| || Sbjct 6135 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACGTTG-TCGATGGTGTCCGAAGACTCCAC 6077 Query 127066 TTCGACGGT 127074 |||| ||| Sbjct 6076 CTCGAGGGT 6068 >seq564 Length=17261 Score = 98.7 bits (108), Expect = 9e-16 Identities = 293/448 (65%), Gaps = 7/448 (2%) Strand=Plus/Plus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTC-GGGCAGCTTTGC 47191 ||||| || | ||||| ||||| | ||||||| || |||||||| ||| | | ||| Sbjct 9120 GCCGAGCGACTCATCGCGTTCGCGTGCATCGAGGGTGTTTTCTTCTCCGGGTCGTTCTGC 9179 Query 47192 GGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCT 47251 || || | | |||||| || | |||||||| || |||||| ||||||||| Sbjct 9180 AGC-ATCTACTGGCTGAAAAAGCGCGGGTTGATGCCCGGGCTGACGTTTTCCAACGAGCT 9238 Query 47252 AATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGT 47311 ||| | |||||||| || ||| | || || || || | |||| | | | Sbjct 9239 CATCAGCCGCGACGAAGGGCTTCACCGTGATTTCGCGTGCCTGTTGTACAGCT----ACT 9294 Query 47312 CGATCAA-AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTG 47370 || ||| || |||||| || || | | || | |||||||| | |||| Sbjct 9295 TGAACAACAAACCGGACGTCGCCGTGGTGAAGCAGATCGTGATGGAAGCCGTGGAGATTG 9354 Query 47371 AGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGA 47430 | | ||||| | ||| || ||||||| || | ||||| |||||| ||| ||| Sbjct 9355 AAAAAGAGTTCCTGTGCGACGCACTGCCCGTGTCCCTGGTGGGCATGAACAAAGAGCTGA 9414 Query 47431 TGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGA 47490 || | |||||||| || ||||| || | | |||| ||||| | ||| Sbjct 9415 TGTCGGACTACATCGAGTTCGTCGCGGATCACTTGCTGTGCCAGCTCGGGCTGGAAAAGG 9474 Query 47491 TTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCA 47550 ||| |||||| ||| || ||||| | ||| | ||| ||||| | || || |||| Sbjct 9475 AATACAACACCGCGAACCCGTTCGACTGGATGGAGCTCATCTCGCTTCAAGGTAAAACCA 9534 Query 47551 ACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||||||||| || ||||| ||||| || Sbjct 9535 ACTTTTTCGAAAAACGCGTAGGCGAGTA 9562 >seq633 Length=11014 Score = 86.0 bits (94), Expect = 6e-12 Identities = 177/260 (68%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 147219 CAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGAT 147278 ||| |||| ||| ||| | || || || | ||| |||| | || ||| | |||||| Sbjct 5688 CAGACCGATACCGCCGGCGGACTTTGAGATGCACGCGCACTCCTTCAGGGTGTCGTAGAT 5747 Query 147279 GCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACA 147338 || |||||| ||| ||||| ||| |||||| ||||| | | || || || Sbjct 5748 ACCCTCGATGGAGTCCTCCTTCATGGCGATCAGGAAGCACGACGAGAGCTGCGGGCGGGG 5807 Query 147339 CGTGCCCGCCGCA-AACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGACTCATCAATT 147397 ||| || || | ||||||||||| |||||||| | | || | || | || | Sbjct 5808 CGTACC-GCTGTTGAACAGCGTGGGCGACGCGTGCGTCATCCAGCGCTCGCTGAGCATGT 5866 Query 147398 GATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGA 147457 | ||||| || |||||| || || || | | || ||| | | || ||||||||||| Sbjct 5867 GGTACGTATCGATGGCGTTCTCCACATCCTTG---TGGATGCCGATGGAGACGCGCATGA 5923 Query 147458 GCATGTGCTGGGGTCGTTCC 147477 ||| ||||||||| |||||| Sbjct 5924 GCAGGTGCTGGGGCCGTTCC 5943 >seq426 Length=55785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 50660 ATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTGCGGCCC 50719 ||||| ||||| |||||| ||||||| || || | |||| | || || || ||| Sbjct 4955 ATGTTCCCCAGGTCGCCGGCGTGGCGCTCCTCGTTGGTGGGCGACCCATGCTTCTTGCCA 5014 Query 50720 AACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAATTCGTGC 50779 ||| || |||||| ||| | ||| |||| |||||| | ||||| ||||| ||||| Sbjct 5015 TTCGGGTTGAAGTGCGGGCCCGTGGACATGCACCCGTTGGTGGTGTCCCCGAACTCGTGG 5074 Query 50780 ACGTGGAACCCGTG 50793 | |||||||||||| Sbjct 5075 ATGTGGAACCCGTG 5088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494446120560