Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq633 181 1e-40 seq151 145 9e-30 seq564 102 1e-16 seq290 87.8 2e-12 seq382 86.0 8e-12 >seq633 Length=11014 Score = 181 bits (200), Expect = 1e-40 Identities = 502/761 (66%), Gaps = 9/761 (1%) Strand=Plus/Plus Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 || || ||||| ||||| || || ||||| | ||| || ||| ||| |||| || Sbjct 5083 GGGAGCGCGATGGACGCGAGGTTGCACACCGCGGTTTCCTCCGGGGACGTGAACTCGATG 5142 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || ||||| |||| || || | ||| || |||| ||||| || || || || | Sbjct 5143 ATCTCCGTGCACAGGTTCGACGACCGAATCGTACCCAGGTTCTGCTGGTTGGATTTGCGG 5202 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || ||||| || ||| | ||||| || || | || || || ||| || | |||||| Sbjct 5203 TTGCACGCGTCTTTGAACAGCATGTAGGGGTTGCCGGTTTCTACTTGCGATTCGAGAATC 5262 Query 116605 GCCTTCCATAC-ATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTT 116663 || ||| | | | ||| || | | || ||| || ||| | | |||||| Sbjct 5263 GCAAACCAAAGGAGCTGCGCCTTG-ATGGTCTTCTTGCCTTTGCCCGCTTTTTCGTACGC 5321 Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTG 116722 ||||| | || ||| | |||||| |||| || | |||||| || || | | Sbjct 5322 CGTGTACTTCTCTTCGAACGCCTCACCC-CAGCAATCCGCGAGCCCGGGGCACTCGTTCG 5380 Query 116723 GACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 | || | || | ||||| || ||| |||| || |||||| ||||| | ||| Sbjct 5381 GGCACATCAGCGTCCATTCGCCGTTTGACTCCACCCTCTGCATGAACAGGTCGTTGGTCC 5440 Query 116783 AGAGCGCCG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 116841 | || |||| |||| || || || ||| |||||||| | || || || | ||| Sbjct 5441 ACAG-GCCGTAGAAAAGGTCGCGCGCGCGCGCTTCTTCCTTGCCGTGGTTCTTCCTCAAA 5499 Query 116842 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTG 116901 || | |||| | ||| || |||||||||||| ||||| | ||| | | |||||| Sbjct 5500 TCGAGCCAGTCGAAGATGTCGCTGTGCCACGGTTCAAGGTAGATCGCAAACGCGCCCTTG 5559 Query 116902 CG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGA 116958 || | || | |||| || |||| ||| || |||| || ||||| ||||| || Sbjct 5560 CGCTTGCCCCCGCCTTGGTCCACGTACCGCGCGGTGTCGTTGAACACGCGCAGCATGGGG 5619 Query 116959 ATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCG 117018 | ||| || | || ||| ||||| || || || ||| | || ||| || ||| Sbjct 5620 ACGATGCCGTTTGAGGTGCCGTTTGTGCCGCGGATGTACGACGCGGTGCCTCGGATGTCG 5679 Query 117019 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTG 117078 |||||| || ||| ||||| || || |||||||||| ||||||||| | || || Sbjct 5680 TGGATGGACAGACCGATACCGCCGGCGGACTTTGAGATGCACGCGCACTCCTTCAGGGTG 5739 Query 117079 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGT 117138 ||||||| || ||||| ||||| |||| | ||||| |||||||| ||| | || Sbjct 5740 TCGTAGATACCCTCGATGGAGTCCTCCTTCATGGCGATCAGGAAGCACGACGAGAGCTGC 5799 Query 117139 GGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 117179 || | || ||||| |||||| || || || | |||||| Sbjct 5800 GGGCGGGGCGTACCGCTGTTGAACAGCGTGGGCGACGCGTG 5840 Score = 113 bits (124), Expect = 6e-20 Identities = 303/463 (65%), Gaps = 19/463 (4%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| || || |||||||| ||||| |||| |||||| | || || Sbjct 4489 TAGATGTTGCTGGTGTAGGGTTCGAAGCACTCGTTGTTGCCCAGGATTTGCGACGTCGAC 4548 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| |||| |||||| ||| || | || | || ||| || Sbjct 4549 GCGGTGGGCATGGGAGCCACGAGAAGCGAGTTCCGCACGCCGCTCGCC-----GCGATCT 4603 Query 116023 TTGAGGG-----CGTCCCAGTCGTAGTTG----AGCTTTGTCTCCCCCT-----CCCACA 116068 ||||| | || ||||||||| || || | || || | |||||| Sbjct 4604 TTGAGCGCAGACCGACCCAGTCGTGCCTGTCCCCGCCGGGCATCACCGTGACGCCCCACA 4663 Query 116069 TATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCT 116128 | ||| ||| ||||| || | ||| | ||||| || | | || || || | || | Sbjct 4664 TTTCAGGCTGCAGGATGCCCTTGGAAACAGGCGACCCGGCGTACGTTTCGTACGTCCCGT 4723 Query 116129 CAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGC 116188 | ||| |||| | || | || || || ||| || || || || ||||| Sbjct 4724 CCACCACCGCTATGGCGTTGGATTCCGTCAGCGCGGCGAAGTAGATCGTTTCGAAAATCT 4783 Query 116189 GAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACAT 116248 || || | | || || ||| |||||| || || || | | || || || |||| Sbjct 4784 CCGCGTTGAGTTTCTGCGCTTCGGGGGAATCGAAGGCCAGGCCGAGCAGGATGAACACAT 4843 Query 116249 CCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGG 116308 ||||||| || ||||| |||||||| || ||||| || | ||| || || || |||| Sbjct 4844 CCGCGAGGCCCTGGACGCCGAGGCCGATGGGGCGGTGCCGCATGTTCGAACGCCGCGCGG 4903 Query 116309 TCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 ||||||| || || | ||| ||||| | ||| || || || Sbjct 4904 TCTCCACTGGGTAGTAGTTCACGTCGATGATCCTGTTCAGGTT 4946 >seq151 Length=22738 Score = 145 bits (160), Expect = 9e-30 Identities = 508/778 (65%), Gaps = 29/778 (4%) Strand=Plus/Minus Query 12305 GAAGAATGTCACACCACCCGCGTCCCCTCGTGGAATGATTGAAACCTTTCGAACCGTGTC 12364 |||||| |||| || ||||||| ||||| || | ||| || | ||| ||||| ||| Sbjct 2573 GAAGAAGGTCAGTCCCCCCGCGTTGCCTCGAGGCACGATGGAGATCTTCGTAACCGGGTC 2514 Query 12365 GTACCCAGGTAAAGTAGCGCCGACGATGGCGTGCCCAGCTTCGTGATACGCCACGA---G 12421 |||| | || | |||||||| ||||||||||| |||||||| ||||| || | | Sbjct 2513 GTACTCGGGCATGAGCGCGCCGACAATGGCGTGCCCGGCTTCGTGGTACGCGACCAAACG 2454 Query 12422 TTCCTTCTTTCGTGGTGAGAACTTGGTGTCACCCTTGGCA---CCCACGATGATGCGTTG 12478 || ||||| | | | | || | | | |||| ||| ||| | | |||||| | Sbjct 2453 TTTCTTCTGCAG-GCTCATCACC--GCGCCTTCCTTCGCAGCACCCGCAACGATGCGCTC 2397 Query 12479 ATACACATTCTCAACGATATCATTCGTGATCGTCCCG---TCGCCGTCGCGGACAGCGCG 12535 | | | | | | || || ||||| | | || ||| | || ||||| | Sbjct 2396 CAAGGCGTCCGCGATCTCCTCCTTACTGATCTCCGTGAGCTC-CCGCCTCG--CAGCGAG 2340 Query 12536 GATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTT 12595 |||||| || ||||| |||||| || |||| || || ||||| | ||| || Sbjct 2339 GATGGCGGCTTCGTTGAGAAGGTTCTGCAGCGCGGCGCCGGAAAAGCCGGGCGTGCGCCG 2280 Query 12596 TGCGATGGCGT-GTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGCGTGGACACCCA 12654 |||| || ||| | ||| || | | | |||| |||| ||||| || || Sbjct 2279 CGCGACCTTGTCGTAA-TCCACGTCCTTGCCGATGGTCTTCCCTCGCGCGTGCACTTTCA 2221 Query 12655 AAATCTTC-TCGCGTCCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGA 12713 ||| | || | ||||| || ||| ||| |||||||| || || || || ||| Sbjct 2220 GGATCCTGATCCTGCCCGCG-ACGTCGGGCAGGTCCACGGTGACCTGTCGGTCGAACCGA 2162 Query 12714 CCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACG 12773 || || || | | ||| ||||| | ||| | |||||||||||| | || | Sbjct 2161 CCGGGCCGCAACAAGGCTGAATCAAGCACGTCAGGCCTGTTCGTCGCCGCCAGCACGATC 2102 Query 12774 ATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCA 12833 | || || | || || || |||||||| || || || || |||||||||||||| Sbjct 2101 ACCCCGGTGTTCCCTTCAAACCCGTCCATCTCGGTTAAAAGCTGGTTGATGGTTTGTTCC 2042 Query 12834 CGTTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTC 12892 || || || ||| || || | | || || | ||||||| || || ||||| || || Sbjct 2041 CGCTCGTCGTTCCCGCCGCCCATC-CCAGCCCCGCGTTGCCGCCCAACCGCGTCGATCTC 1983 Query 12893 GTCAATGAAAACGATACACGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCA 12948 ||||||||| ||||| || || ||| |||| || ||| || | ||| || | Sbjct 1982 GTCAATGAACACGATGCAAGGCGCCTTGGATTTC----GCCTTTTCGAACAAATCGCGAA 1927 Query 12949 CTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGA 13008 | | | || ||||| || || ||||||||||| || | || ||||| ||| || | Sbjct 1926 CACGCGACGCCCCGACCCCGACGAACATCTCCACGAACTCGGAGGCGGCGCATGAGAAAA 1867 Query 13009 AGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | || ||| | ||| ||||| | |||| |||||| | ||||| || ||||| || Sbjct 1866 ACGGCACGCCCGCTTCGCCCGCCACGGCTTTGGCGAGCAAAGTCTTGCCGGTCCCCGG 1809 >seq564 Length=17261 Score = 102 bits (112), Expect = 1e-16 Identities = 229/335 (68%), Gaps = 8/335 (2%) Strand=Plus/Minus Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||||| |||| |||| ||||| || |||||| ||| |||||| || | ||| || Sbjct 9444 GATCCGCGACGAACTCGATGTAGTCCGACATCAGCTCTTTGTTCATGCCCACCAGGG-AC 9386 Query 127410 ATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG-GC 127467 | ||| || ||||| | | |||| | || ||||| ||||| |||||| ||||| || Sbjct 9385 ACGGGCAGTGCGTCGCACAGGAACTCTTTTTCAATCTCCACGGCTTCCATCACGATCTGC 9326 Query 127468 GTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT--CTTGAAGAGTTCCACAGCAAAC 127525 | | | | | || | ||| | ||| | |||| || | | ||| || || Sbjct 9325 TTCACCACGG-CGACGTCCGGTTTGTTGT-TCAAGTAGCTGTACAACAGGCAC-GCGAAA 9269 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || |||| || || ||||| ||| |||||| || || || || ||| || ||||| Sbjct 9268 TCACGGTGAAGCCCTTCGTCGCGGCTGATGAGCTCGTTGGAAAACGTCAGCCCGGGCATC 9209 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 | || ||||| |||| |||| | || || || || || |||||||| | ||||| Sbjct 9208 AACCCGCGCTTTTTCAGCCAGTAGATGCTGCAGAACGACCCGGAGAAGAAAACACCCTCG 9149 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 | ||||||||||| | || |||||||| ||||| Sbjct 9148 ATGCACGCGAACGCGATGAGTCGCTCGGCGAAGGA 9114 >seq290 Length=36984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/246 (68%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 176736 GAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTG 176795 ||||||||||||||| ||||| | ||| ||| ||| ||| ||| | | Sbjct 5359 GAAGACCCAAAATCTGCTTGATGTACGTGATCTCCGCGTTGTTCATGATTTGGTCGTGCG 5300 Query 176796 AAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGAC 176855 | ||||| | ||| ||| | |||||||| || ||||| || ||||| | || || | Sbjct 5299 ACGCGTCTCTGACGTTTAAAAGTTTCCCGCGTAGCGGGAAAACGCCGTACCGGTCCCGGC 5240 Query 176856 CAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGA 176915 | ||||| || | || || || || | |||||||||||| || ||||||| || | Sbjct 5239 CCACCACGGACAAGCCGCTCACCGCAAGCGCCTTCGCGGAATCGCCTTCCGTCAAAATCA 5180 Query 176916 GCGTACACT--TTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAAT 176973 ||| || | | || || |||| || || | ||| || ||||||| ||||||||| Sbjct 5179 ACGTGCAGTGCTCGGAGTTTTTGCC--ACCTGCGTCGTTGGCGTCGTCCAGCTTGGGAAT 5122 Query 176974 ACCAGT 176979 ||||| Sbjct 5121 CCCAGT 5116 >seq382 Length=14395 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 125413 AAACTTGTTGTCAATGAACCAGATGGAACTGACATCAACGATGGCCATAGCCTTTTGTCC 125472 ||||||||| |||| |||||| || | ||||||||| ||| || | |||||||||||| Sbjct 3885 AAACTTGTTATCAAAGAACCAAATTTGATTGACATCAATGATAGCTAGAGCCTTTTGTCC 3944 Query 125473 CTTCTCGACACTGTCGAGGGGAACG 125497 |||||||| ||| ||||| | |||| Sbjct 3945 CTTCTCGATACTATCGAGAGAAACG 3969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499002010040