Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq633 120 5e-22 seq19 104 4e-17 >seq633 Length=11014 Score = 120 bits (132), Expect = 5e-22 Identities = 335/502 (67%), Gaps = 13/502 (3%) Strand=Plus/Plus Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAG 203890 ||||||| |||||| ||||||| | |||| | | || ||| || | ||| ||| Sbjct 4097 CCTTCGTGGGGTCCACAGTGAACTTCACCGCGTCCGCCGC-GGCGCGCGAGCGCAGGTAG 4155 Query 203891 TACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC 203950 ||||| || ||||| || ||||||| ||| |||| | ||||| ||| | || || | | Sbjct 4156 TACATCCCCGTCTTCAGCCCCTTCTTCCAGGCGTAGAAGTGCAGGGACGTGAGCTTCCCC 4215 Query 203951 ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CG 204009 |||| | ||| | |||||| | ||| | |||||||||||||||||| || ||||| || Sbjct 4216 GCGTTCGCGTCCGACATGTGCACGTTGAAGGACTGGCTTTGGTCGATG-AACGCGCCTCG 4274 Query 204010 ATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG-AACACGT 204068 || |||||||| | | || |||| || |||||||| || ||| || || Sbjct 4275 GTCGGCGGCCATGTCCACAAGCACGCGCTGCTTGATTTCCCACACGGTTTTGTAAATCGC 4334 Query 204069 CTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCG-AGCCGTTGTCGGCCATCAGT 204127 || || | | || || | ||| | | || || |||||||| || || || Sbjct 4335 CTTGAGTTCCTCGGGG---ATGT--CCAGGCCTTGCACGCTGCCGTTGTTGGAGATGAG- 4388 Query 204128 CTCATCCTCGTCT-CCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGG 204186 || | || | | |||||| || | ||| ||| | |||||| Sbjct 4389 GTCGTTCTTGAGTGAGGGGTCCCACAACCCTAGTTCCGTCAAATCCGAAAGAAGGTGGTT 4448 Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246 ||| | | || |||||||| ||||||| || || | | | |||| ||||| | || Sbjct 4449 GTTCACCACGGTGAACTCTCCGGAAAGCACCCGTCTGGCGTAGATGTTGCTGGTGTAGGG 4508 Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAG 204306 |||||| |||||||||||| | || || | || || |||||||||||||||| Sbjct 4509 TTCGAAGCACTCGTTGTTGCCCAGGATTTGCGACGTCGACGCGGTGGGCATGGGAGCCAC 4568 Query 204307 GAGCAGGGAGTTGCGCACACCG 204328 ||| || ||||| ||||| ||| Sbjct 4569 GAGAAGCGAGTTCCGCACGCCG 4590 Score = 113 bits (124), Expect = 7e-20 Identities = 262/389 (67%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 205159 CACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAAT 205218 |||||||| ||| ||||||||| || ||||||||||||| || || || || || | Sbjct 5412 CACCCTCTGCATGAACAGGTCGTTGGTCCACAGGCCGTAGAAAAGGTCGCGCGCGCGCGC 5471 Query 205219 TCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACG 205277 | | || | || ||||||| |||| || |||| || || | |||||| |||||||| Sbjct 5472 TTCTTCCTTGCCGTGGTTCTTCCTCAAATCGAGCC-AGTCGAAGATGTCGCTGTGCCACG 5530 Query 205278 GCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAG 205337 | || | | | || | ||||| | |||| ||| || |||||||| || | Sbjct 5531 GTTCAAGGTAGATCGCAAACGCGCCCTTGCGCTTGCCCCCGCCTTGGTCCACGTACCGCG 5590 Query 205338 TCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGT 205397 | ||||||| || |||||||| || || | ||||| | ||| ||||| |||| | Sbjct 5591 CGGTGTCGTTGAACACGCGCAGCATGGGGACGATGCCGTTTGAGGTGCCGTTTGTGCCGC 5650 Query 205398 TGATGGCCGA-GCCTTCAGCC-CTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACA 205455 |||| ||| || | ||| | | || | ||||| | || || ||||| | | Sbjct 5651 GGATGTACGACGCGGT--GCCTCGGATGTCGTGGATGGACAGACCGATACCGCCGGCGGA 5708 Query 205456 CTTGGCGATCTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGC 205515 ||| | ||| |||||||| | ||| ||| |||||| || ||||||| || ||| Sbjct 5709 CTTTGAGATGCACGCGCACTCCTTCAGGGTGTCGTAGATACCCTCGATGGAGTCCTCCTT 5768 Query 205516 CAGTGTCACCAGATAGCACGAAGCCAGCT 205544 || | | ||| ||||||| | |||| Sbjct 5769 CATGGCGATCAGGAAGCACGACGAGAGCT 5797 >seq19 Length=40506 Score = 104 bits (114), Expect = 4e-17 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 |||||| ||||||||||||| |||||||| || ||| | |||||| || | | || Sbjct 29649 GCACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGGCTGATCAGCTCGTTTGAAAACGTCAG 29708 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAA 160040 ||| ||||| || || ||||||||| ||||| | |||| |||| ||||| |||| Sbjct 29709 GCCTTTCATGAGGCCTCGTTTTTTGAGCCAGAAAATCG-CGCAGAAGCTCCCGCTGAAAA 29767 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAG 160071 | |||||||||||| ||| ||||| ||||| Sbjct 29768 AAATCCCCTCCACGCACGCGAACGCGACGAG 29798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795144574738640