Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq247 131 2e-25 seq520 129 6e-25 seq19 107 2e-18 seq648 98.7 1e-15 >seq247 Length=13427 Score = 131 bits (144), Expect = 2e-25 Identities = 147/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 ||||||| || ||||||||| |||| || ||| | | |||| | | | |||| | || Sbjct 6051 TCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGACAACG-TGAAG 6109 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 | ||||||| ||||| ||||| || ||| | ||||| ||||| ||||||| ||||||| Sbjct 6110 GCGAAAATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGCCTCATTTTCGCGGGC 6169 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || || | ||||| ||| || ||||||||||| |||||| | ||||| Sbjct 6170 AAGCAGCTTGAGGATGGCCGCACGCTCGCGGATTACAACATCCAGAAGGAATCCACGCTT 6229 Query 38445 CATTTGGTGCTGCG 38458 || ||||||| || Sbjct 6230 CACCTGGTGCTCCG 6243 >seq520 Length=32656 Score = 129 bits (142), Expect = 6e-25 Identities = 152/202 (75%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 38260 AAACGC--TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AA 38316 |||||| ||||||| || ||||||||| | || || ||| | | |||| | | | || Sbjct 23779 AAACGCAGTCACGGGTAAGACCATCACCCTGGAGGTGGAGTCTTCGGACACCATCGACAA 23720 Query 38317 CGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTT 38376 || | || | || |||| ||||| || || |||||| ||||||| ||||| ||||| | Sbjct 23719 CG-TCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAGCGTCTCATCT 23661 Query 38377 ACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAG 38436 ||||||||| ||||| || |||| ||||||||| || ||||||||||| |||||| Sbjct 23660 TCGCGGGCAAGCAGCTTGAGGACGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAAT 23601 Query 38437 CGACGCTGCATTTGGTGCTGCG 38458 | || ||||| | || ||||| Sbjct 23600 CCACCCTGCACCTCGTCCTGCG 23579 >seq19 Length=40506 Score = 107 bits (118), Expect = 2e-18 Identities = 129/172 (75%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 132879 ATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTC 132938 ||||| | ||| |||||| || |||||||| |||||||||||||| | | || || || Sbjct 29635 ATGCT-GTACAACAAGCACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGGCTGATCAGCTC 29693 Query 132939 GTTGCTGAAA--GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCG 132996 ||| ||||| |||| ||| ||||||||| |||||||||||||| || || ||| | Sbjct 29694 GTT--TGAAAACGTCAGGCCTTTCATGAGGCCTCGTTTTTTGAGCCAGAAAATCGCGCAG 29751 Query 132997 AAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCT 133048 || || || || || | ||||| ||| |||||| || || ||||||| Sbjct 29752 AAGCTCCCGCTGAAAAAAATCCCCTCCACGCACGCGAACGCGACGAGGCGCT 29803 >seq648 Length=41169 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || ||||| || ||| | || ||||| ||||||||| | || || ||| | Sbjct 13342 AAATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACCCTGGAGGTTGAGTCTT 13401 Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | |||| | || | || |||| |||| || || | ||| ||| | Sbjct 13402 CGGACACCATCGACAACG-TGAAGGCGAAGATCCAGGACAGGGAAGGCTTACCCCCCG-C 13459 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | || ||||| ||||| || |||| ||||| | |||||| Sbjct 13460 CACCAGCGTCTCATCTTCGTGGGCAGGCAGCTCGAAGACGTCCGCACGTTGGCGGACTAC 13519 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||| | |||| | ||||| | ||||||| Sbjct 13520 AACATCCAGATGGAATCCACGCTCGACCTGGTGCT 13554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166116440960