Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq96 589 3e-163 seq119 82.4 1e-10 >seq96 Length=7150 Score = 589 bits (652), Expect = 3e-163 Identities = 1087/1588 (68%), Gaps = 16/1588 (1%) Strand=Plus/Plus Query 6523 GTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATCTTT 6582 |||||| || || || ||||| || |||| || || || || || ||||| ||| Sbjct 4878 GTAGTTCTCCAGCCCGTTCTTGGCTTCGATTTTCTTTTTGTGCTCCTCGTCTTCGGATTT 4937 Query 6583 ATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATC 6642 ||||| ||||| || |||||||| ||| |||||||||||||||| | || || || Sbjct 4938 GTACTTCTCCGCTTCCTGGACCATGCGTTCGATGTCTTCTTTCGATAGCCGGCCTTTGTC 4997 Query 6643 ATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAA 6702 ||||| ||||| ||||| | | |||| || ||| || || || || || || | Sbjct 4998 GTTCGTGATCGTGATCTTGTTCTTCTGCCCCGTGGACTTGTCCTCGGCGCTGACGTTGAG 5057 Query 6703 AATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGC 6762 ||| || || || || | ||||| | || || ||||| || || | ||| |||| Sbjct 5058 AATGCCGTTGGCGTCGATGTCGAAGCACACGTTGATTTGCGGGACGCCTCGCGGGGCGGG 5117 Query 6763 TGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTC 6822 || || || || || || | || | | |||| ||| ||| | | || || Sbjct 5118 GGGGATGCCTTGTAGTTCGAACTTCCCTAAAAGGTTGTTGTCCTTCGTCCGCGAGCGCTC 5177 Query 6823 ACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCT-TGTGCCGTTGAGAAGATTT 6881 ||||| | || | ||| ||| ||||||| ||||| ||| | || ||||| | | Sbjct 5178 GCCTTCGAAAACCTGAATCAAAACCCCAGGTTGGTTATCGCTGTAC-GTGGAGAACACCT 5236 Query 6882 GTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCA 6941 ||||||| || | || || || || |||| ||| || | | |||||| | || |||| Sbjct 5237 GTTCTTTTTTGGTGGGGATGGTGGTGTTTCGCGGGATCAGCACGGTCATGACGCCGCCCA 5296 Query 6942 TAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATT 7001 ||||| || || | ||||| || | ||||| | || | ||||| || || || Sbjct 5297 CGGTTTCCAGGCCCATGGACAGGGGCGAGACGTCGAGAAGCAGAAGGTCCTGGACCTTTT 5356 Query 7002 CGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCAT 7061 |||| || || |||| | || || || || |||| ||| ||||| || || || || | Sbjct 5357 CGTTGCCCTCGCCCGAAAGAATAGCCGCCTGCACCGCCGCGCCGTACGCCACGGCTTCGT 5416 Query 7062 CGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAA-CATTTGTTGA 7120 ||||||| || | || ||| ||||| ||||| ||| | || ||| | || || Sbjct 5417 CGGGGTTGATGCTCTTGCACAGCTCTTTGCCGTTGAAAAAGTC-GATGAGCAGGGACTGC 5475 Query 7121 ATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCG 7180 | || || || || || || || || |||| ||||| || | ||| | | ||| || Sbjct 5476 ACCTTGGGAATCCGGGTGGACCCGCCCACCATCACGATCTCGTGCACGGTGGCTTTGTCC 5535 Query 7181 ATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATA 7240 ||||| ||| || | || || ||||||||||| || || |||||||| ||||| Sbjct 5536 ATCTTGCTGTCCCGCAAGCACTTCTCCACAGGTTCCATGCACTTGCGGAACAAATCCATG 5595 Query 7241 CACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAAC 7300 || || || || || || || || ||| || |||||||| || || ||| | | | Sbjct 5596 TTAAGCTCTTCGAAGCGCGCGCGCGTGATGCTGGTGTAGAAATCTACACCCTCGAAAAGC 5655 Query 7301 GAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 || || || || ||| | || || || || || || | ||| ||||| || | || ||| Sbjct 5656 GAGTCGATCTCGATGCTGGTCTGCGCGGTTGACGAAAGCGTGCGCTTGGCTCTTTCGCAC 5715 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 || || || ||||||||||| || |||||||| || | || ||||| || | || || Sbjct 5716 GCGGTGCGCAAACGACGAAGCGCGCGCGGGTTCCCCGTGATGTCTTTTTTGTTCTTGCGC 5775 Query 7421 TTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 || ||||| | |||||| | | ||| |||||||| || || |||||||| Sbjct 5776 TTGAACTCCTGCACGAAGTGGTTCATCATCCTCTGGTCGAAATCCTCGCCGCCCAAGTGC 5835 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || |||||||| ||||||||||| ||||| || |||| || | | |||||| || Sbjct 5836 GTGTCACCCGCGGTGGCTTTGACTTCGAAGATGCCCTCTTCGATTGTGAGCAACGACACG 5895 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCG-------TCTTT 7593 || || || || || || ||||| || || | ||||| ||| || ||| Sbjct 5896 TCGAAGGTGCCGCCGCCGAGGTCGAAGATCAAAACGTTGCGCTCGGCGCCGCCGTTCTCG 5955 Query 7594 G--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651 | ||||| || | ||||||||||| ||||| || || ||||| || ||||| || | Sbjct 5956 GCTTTCTTGTCCAAGCCGTACGCGATGGCCGCGGCGGTGGGTTCGTTGATAATGCGCATG 6015 Query 7652 CAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAG 7711 ||||| | ||| || || || || || || || ||||| |||||||||||||| ||| Sbjct 6016 CAGTTGATGCCCGCGATCACGGCGGCGTCCTTGGTGGCTTGCCGTTGCGAATCGTTGAAG 6075 Query 7712 TAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATA 7771 || || || || || || ||||||| ||| | |||||| || || | ||||||| Sbjct 6076 TACGCGGGCACGGTAACCACCGCGTTTTTGATCTCCTTACCCAGGTAAGCCTCCGCGACT 6135 Query 7772 TCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCA 7831 || ||||| || |||| ||| || || ||||| || || || |||||| ||| Sbjct 6136 TCCTTCATCTTCACGAGAATCATGGAAGAGATCTCCTCCGCGCTGAATTGTTTCTGTTCG 6195 Query 7832 CCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGAC 7891 |||| || || || ||||||||||| || || |||| | | ||||| | | | Sbjct 6196 CCGTGGAACTCGACGCTGATCATGGGTTTCTCGGCTTCACCCGACAACACCTTGAAAGGC 6255 Query 7892 CAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTT 7951 || || || || || | || ||||| |||| ||||| || ||||| | ||||| Sbjct 6256 CAGTCCTTGATGTCTGCCTGAACCTGGGGGTCGCTGAACTTCCTGCCGATCAACCGCTTC 6315 Query 7952 GCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATA 8011 || || ||||| ||||| | |||||||| || ||||||||||| || ||||||||||| Sbjct 6316 GCGTCGAAAACGGTGTTGATCGGGTTCATCGCGGTTTGGTTCTTAGCGGCGTCCCCGATG 6375 Query 8012 AGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCG 8071 || || || | || || |||||||||||||| || ||||| || ||||||||| Sbjct 6376 AGGCGCTCGGAA---TCGGTGAACGCGACGTACGAAGGCGTCGTGCGCGCGCCTTGGTCG 6432 Query 8072 TTCGCAATAATTTCTACGCGGTCGTTTT 8099 ||||| || || || |||| || || || Sbjct 6433 TTCGCGATGATCTCGACGCTGTTGTGTT 6460 >seq119 Length=55923 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 131980 TTCTCTCGTAACTCAGTTGGTTAGAGTGTGCGACTGTTAATCGCGAAGTCACCGGTTCAA 132039 ||||| |||| ||||||||| ||||| ||||||||||||||||||| ||| ||||||| | Sbjct 30227 TTCTC-CGTAGCTCAGTTGGCTAGAGCGTGCGACTGTTAATCGCGAGGTCGCCGGTTCGA 30285 Query 132040 CTCCGGTCGAGAGA 132053 ||||||| |||| Sbjct 30286 TCCCGGTCG-GAGA 30298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635124313037960