Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq520 136 9e-27 seq247 127 5e-24 seq648 102 2e-16 >seq520 Length=32656 Score = 136 bits (150), Expect = 9e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| || || || || |||||||| || || || | || || || Sbjct 23585 ACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCGTCCTCA 23644 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || ||||||||||| ||||| || Sbjct 23645 AGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGG 23704 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||||||| ||||| || ||||| | ||||| Sbjct 23705 ATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTGATGGTCTTA 23764 Query 195112 CCTGT 195116 || || Sbjct 23765 CCCGT 23769 >seq247 Length=13427 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||||| || || || || |||||||| || || || | ||||| || Sbjct 6237 ACCAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGGCCATCCTCA 6178 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || ||||| || || || || || ||||| || Sbjct 6177 AGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGG 6118 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| ||||| || |||||||||||| ||||| || ||||| | ||||| Sbjct 6117 ATTTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTA 6058 Query 195112 CCTGT 195116 || || Sbjct 6057 CCCGT 6053 >seq648 Length=41169 Score = 102 bits (112), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||| || ||||| || | || || ||||| || || | || | | |||||| Sbjct 13551 ACCAGGTCGAGCGTGGATTCCATCTGGATGTTGTAGTCCGCCAACGTGCGGACGTCTTCG 13492 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||| | || ||||||| || || || ||| | || || | |||||| |||| || Sbjct 13491 AGCTGCCTGCCCACGAAGATGAGACGCTGGTGG-CGGGGGGTAAGCCTTCCCTGTCCTGG 13433 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || |||||||||||| || || || ||||| | ||||| Sbjct 13432 ATCTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCAACCTCCAGGGTGATGGTCTTG 13373 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || ||||| || || ||||| | ||||||| Sbjct 13372 CCAGTCAACGTCTTCACGAAGATCTGCATTT 13342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109466403915923