Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq564 203 6e-47 seq633 127 4e-24 >seq564 Length=17261 Score = 203 bits (224), Expect = 6e-47 Identities = 328/461 (71%), Gaps = 13/461 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | || || || ||||| || || || | | ||||||| ||| Sbjct 9566 CTGGTACTCGCCTACGCGTTTTTCGAAAAAGTTGGTTTTACCTTGAAGCGAGATGAGCTC 9507 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| || ||| ||||| | ||||| || || | ||| || | ||| ||||| Sbjct 9506 CATCCAGTCGAACGGGTTCGCGGTGTTGTATTCCTTTTCCAGCCCGAGCTGGCACAGCAA 9447 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 ||||||||||||| |||||||||| | ||||| || |||||||||| | ||||| Sbjct 9446 GTGATCCGCGACGAACTCGATGTAGTCCGACATCAGCTCTTTGTTCATGCCCACCAGGGA 9387 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 |||||||| || | || ||||| || || |||| |||||||||| ||| ||||| Sbjct 9386 CACGGGCAGTGCGTCGCACAGGAACTCTTTTTCAATCTCCACGGCTTCCATCACGATCTG 9327 Query 48079 CTT-AACGCGG-GAC-TCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 ||| | | ||| ||| || ||||||||| || || || || | || ||| || Sbjct 9326 CTTCACCACGGCGACGTC---CGGTTTGTTGTTCAAGTAGCTG---TACAACAGGCACGC 9273 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 || || | ||| | |||||||| |||||||||||| ||||||| || || || || Sbjct 9272 GAAATCACGGTGAAGCCCTTCGTCGCGGCTGATGAGCTCGTTGGAAAACGTCAGCCCGGG 9213 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGC-GAAAGAGCCAGAGAAGAAGATGC 48254 ||| | ||| | || ||| |||||| | | ||| || ||| || || |||||||| | | Sbjct 9212 CATCAACCCGCGCTTTTTCAGCCAGTAGA-TGCTGCAGAACGACCCGGAGAAGAAAACAC 9154 Query 48255 CCTCCACTGC-CGCGAACGCGGTGAGCCTCTCTCCGAAAGA 48294 |||| | ||| |||||||||| |||| | ||| |||| || Sbjct 9153 CCTCGA-TGCACGCGAACGCGATGAGTCGCTCGGCGAAGGA 9114 >seq633 Length=11014 Score = 127 bits (140), Expect = 4e-24 Identities = 491/757 (65%), Gaps = 16/757 (2%) Strand=Plus/Plus Query 213480 GGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATG 213539 || || |||||| || |||||||| || || |||| | | ||| |||| ||| Sbjct 5083 GGGAGCGCGATGGACGCGAGGTTGCACACCGCGGTTTCCTCCGGGGACGTGAACTCGATG 5142 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 ||||| ||||||||||| | || || || ||||||||||| ||||| || |||||| Sbjct 5143 ATCTCCGTGCACAGGTTCGACGACCGAATCGTACCCAGGTTCTGCTGGTTGGA-TTTGCG 5201 Query 213600 TTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTAT 213658 | ||| | || ||| | |||||||||||| ||||| |||| || || | || || Sbjct 5202 GTTGCACGCGTCTTTGAACAGCATGTAGGGGTTGCCGGTTTCTACTTGCGATTCGAGAAT 5261 Query 213659 CTGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGT 213717 | ||| ||| | ||| ||||||| | | || | || | | |||| Sbjct 5262 CGCAAACCAAAGG-AGCTGCGCCTTGATGGTCTTCTTGCCTTTGCCCGCTTTT---TCGT 5317 Query 213718 ACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGA- 213775 || ||| ||| | ||| | | |||||| | | | | || || || || Sbjct 5318 ACGCCGTGTACTTCTCTTCGAACGCCTCACCCCAGCAATCCG-CGAGCCCGGGGCACTCG 5376 Query 213776 TGCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCG 213834 | |||| ||||| || |||| || |||| ||| || ||||||||||||||||| Sbjct 5377 TTCGGG-CACATCAGCGTCCATTCGCCGTTTGACTCC-ACCCTCTGCATGAACAGGTCGT 5434 Query 213835 GGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGC 213894 | |||||| || ||| ||||| | | | | || ||| || ||| || | Sbjct 5435 TGGTCCACAGGCCGTAGAAAAGGTCGCGCGCGCGCGCTTCTTCCTTGCCGTGGTTCTTCC 5494 Query 213895 GCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGC 213954 || ||| || |||| |||||||| ||||||||| || | |||||| ||||| |||| Sbjct 5495 TCAAATCGAGCCAGTCGAAGATGTCGCTGTGCCACGGTTCAAGGTAGATCGCAAACGCGC 5554 Query 213955 CCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGA 214011 || | |||| ||||| |||||||| || || |||||| | |||||| | Sbjct 5555 CCTTGCGCTTGCCCCCGCCTTGGTCCACGTACCGCGCGGTGTCGTTGAACACGCGCAGCA 5614 Query 214012 CGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA 214071 ||| || | ||||| || ||||| || || || ||||| ||| | | | | Sbjct 5615 TGGGGACGATGCCGTTTGAGGTGCCGTTTGTGCCGCGGATGTACGACGCGGTGCCTCGGA 5674 Query 214072 GGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCA 214131 || | ||||| || || || || |||||| |||| ||||| ||||| | ||| Sbjct 5675 TGTCGTGGATGGACAGACCGATACCGCCGGCGGACTTTGAGATGCACGCGCACTCCTTCA 5734 Query 214132 CAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGA 214191 || || ||| || | ||| ||| || | | | | || |||||| ||||| Sbjct 5735 GGGTGTCGTAGATACCCTCGATGGAGTCCTCCTTCATGGCGATCAGGAAGCACGACGAGA 5794 Query 214192 GCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGG 214228 |||| || | || || || |||||| |||||||| Sbjct 5795 GCTGCGGGCGGGGCGTACCGCTGTTGAACAGCGTGGG 5831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931520352392960