Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq564 116 7e-21 seq633 105 1e-17 >seq564 Length=17261 Score = 116 bits (128), Expect = 7e-21 Identities = 280/424 (66%), Gaps = 13/424 (3%) Strand=Plus/Plus Query 25903 GAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC 25961 ||||| | || ||| ||| ||||| ||| || |||| |||||| || || ||| Sbjct 9150 GAGGGTGTTTTCTTCTCCGGGTCGTTCTGCAGC-ATCTACTGGCTGAAAAAGCGCGGGTT 9208 Query 25962 CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGA 26021 |||||||||||| ||||||||||||||||||||| | ||||| || || ||| | || Sbjct 9209 GATGCCCGGGCTGACGTTTTCCAACGAGCTCATCAGCCGCGACGAAGGGCTTCACCGTGA 9268 Query 26022 TTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGT-CT 26080 ||| || |||||| | |||| || ||||| | |||||| | | | |||| | Sbjct 9269 TTTCGCGTGCCTGTTGTACA---GCTACTTGAACAACAAAC---CGGACGTCGCCGTGGT 9322 Query 26081 ACAG--TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNN 26138 || ||| | | || || |||||||| || || ||||| | Sbjct 9323 GAAGCAGATCGTGATGGAAGCCGTGGAGATTGAAAAAGAGTTCCTGTGCGACGCACTGCC 9382 Query 26139 NNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATACATTGAGTATGTGGCCG 26197 ||||||||||||| ||| || ||| | ||||| |||| || || | Sbjct 9383 CGTGTCCCTGGTGGGCATGAACAA-AGAGCTGATGTCGGACTACATCGAGTTCGTCGCGG 9441 Query 26198 ACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACT 26257 | || ||||||||||||| || || | | |||| || | ||||||||||||| Sbjct 9442 ATCACTTGCTGTGCCAGCTCGGGCTGGAAAAGGAATACAACACCGCGAACCCGTTCGACT 9501 Query 26258 TTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACT 26317 ||||| ||| ||| | |||| || |||||||| || ||||| | || ||||| | Sbjct 9502 GGATGGAGCTCATCTCGCTTCAAGGTAAAACCAACTTTTTCGAAAAACGCGTAGGCGAGT 9561 Query 26318 ATCA 26321 | || Sbjct 9562 ACCA 9565 >seq633 Length=11014 Score = 105 bits (116), Expect = 1e-17 Identities = 278/421 (66%), Gaps = 4/421 (1%) Strand=Plus/Plus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||||||||||||| ||||| | ||||||| | | || || || | | ||| Sbjct 5413 ACCCTCTGCATGAACAGGTCGTTGGTCCACAGGCCGTAGAAAAGGTCGCGCGCGCGCGCT 5472 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 || ||| ||||| ||| ||||||| ||| | | || || ||||| ||||||||| Sbjct 5473 TCTTCCTTGCCGTGGTTCTTCCTCAAATCGAGCCAGTCGAAGATGTCGCTGTGCCACGGT 5532 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCC 222211 || || |||| || | ||||| |||||| || || || ||||| || | | Sbjct 5533 TCAAGGTAGATCGCAAACGCGCCCTTGCGCTTGCCCCCGCCTTGGTCCACGTACCGCGCG 5592 Query 222212 AGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTA 222271 ||||||| | ||| || | || || | ||||| || ||||| ||||| Sbjct 5593 GTGTCGTTGAACACGCGCAGCATGGGGACGATGCCGTTTGAGGTGCCGTTTGTGCCGCGG 5652 Query 222272 ATGTACGCACCGCCGGCCCTCAGGT-TACTGG-CAGACATGCCGATACCACCGGCGTGTT 222329 ||||||| ||| | |||| | | | ||| |||| |||||||| |||||| | Sbjct 5653 ATGTACG--ACGCGGTGCCTCGGATGTCGTGGATGGACAGACCGATACCGCCGGCGGACT 5710 Query 222330 TCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGA 222389 | ||||| ||||| ||| || ||||| ||| ||||| || ||||||||||| | Sbjct 5711 TTGAGATGCACGCGCACTCCTTCAGGGTGTCGTAGATACCCTCGATGGAGTCCTCCTTCA 5770 Query 222390 CGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGG 222449 | | ||| || || ||||| | ||| | || | || | ||| |||||||||| Sbjct 5771 TGGCGATCAGGAAGCACGACGAGAGCTGCGGGCGGGGCGTACCGCTGTTGAACAGCGTGG 5830 Query 222450 G 222450 | Sbjct 5831 G 5831 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 221110 GTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGT 221169 ||| ||||||||||| ||| ||||| || ||||||| || ||| | ||| || Sbjct 4443 GTGGTTGTTCACCACGGTGAACTCTCCGGAAAGCACCCGTCTGGCGTAGATGTTGCTGGT 4502 Query 221170 GAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGG 221229 | | ||||||| || |||||||||||||||||| || | ||| |||||||||||||| Sbjct 4503 GTAGGGTTCGAAGCACTCGTTGTTGCCCAGGATTTGCGACGTCGACGCGGTGGGCATGGG 4562 Query 221230 TGCCACCAGCAGACTGTTGCGCA 221252 ||||| || || ||| |||| Sbjct 4563 AGCCACGAGAAGCGAGTTCCGCA 4585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928832388311360