Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq633 181 1e-39 seq564 143 3e-28 seq356 96.9 4e-14 seq450 89.7 6e-12 seq856 86.0 8e-11 >seq633 Length=11014 Score = 181 bits (200), Expect = 1e-39 Identities = 198/263 (75%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| ||||| ||||| |||||||| || ||||| |||||||| |||| |||||| || Sbjct 5575 TGGTCCACGTACCGCGCGGTGTCGTTGAACACGCGCAGCATGGGGACGATGCCGTTTGAG 5634 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||| ||||| | ||| | ||| | | || | | ||| || | ||| Sbjct 5635 GTGCCGTTTGTGCCGCGGATGTACGACGCGGTGCCTCGGATGTCGTGGATGGACAGACCG 5694 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || |||||||| ||||| |||||| |||||||| || || ||||||||||| |||||| Sbjct 5695 ATACCGCCGGCGGACTTTGAGATGCACGCGCACTCCTTCAGGGTGTCGTAGATACCCTCG 5754 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||||| |||||||| | | || |||||||||||| |||||| | | ||| ||| Sbjct 5755 ATGGAGTCCTCCTTCATGGCGATCAGGAAGCACGACGAGAGCTGCGGGCGGGGCGTACCG 5814 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGC 1630328 |||||| |||||||||| ||| Sbjct 5815 CTGTTGAACAGCGTGGGCGACGC 5837 Score = 149 bits (164), Expect = 8e-30 Identities = 314/476 (66%), Gaps = 6/476 (1%) Strand=Plus/Plus Query 1628128 AGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTG 1628187 |||||||| ||| |||| || |||| |||| || |||||| ||||||||||| Sbjct 5101 AGGTTGCACACCGCGGTTTCCTCCGGGGACGTGAACTCGATGATCTCCGTGCACAGGTTC 5160 Query 1628188 GCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGG 1628247 | |||| |||||||||||||||||||||||| | ||||| ||||| ||| Sbjct 5161 GACGACCGAATCGTACCCAGGTTCTGCTGGTTGGATTTGCGGTTGCACGCGTCTTTGAAC 5220 Query 1628248 AGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGC 1628307 ||||||||||| |||||| || | |||| ||| || || |||| | | || Sbjct 5221 AGCATGTAGGGGTTGCCGGTTTCTACTTGCGATTCGAGAATCGCAAACCAAAGGAGCTGC 5280 Query 1628308 GCGGGCACGACAGTCCGCGCGCG---GCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCA 1628364 || | || ||| | || |||| || Sbjct 5281 GC---CTTGATGGTCTTCTTGCCTTTGCCCGCTTTTTCGTACGCCGTGTACTTCTCTTCG 5337 Query 1628365 AAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAG 1628424 || ||| | || |||| || || ||||| |||| ||| || | |||| ||| Sbjct 5338 AACGCCTCACCCCAGCAATCCGCGAGCCCGGGGCACTCGTTCGGGCACATCAGCGTCCAT 5397 Query 1628425 TCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGG 1628484 ||||| | | || | | |||| || ||||| |||||||| |||| || ||| Sbjct 5398 TCGCCGTTTGACTCCACCCTCTGCATGAACAGGTCGTTGGTCCACAGGCCGTAGAAAAGG 5457 Query 1628485 TCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATG 1628544 |||||||| || || ||||||||||||||||| | | ||||||||||||| ||| Sbjct 5458 TCGCGCGCGCGCGCTTCTTCCTTGCCGTGGTTCTTCCTCAAATCGAGCCAGTCGAAGATG 5517 Query 1628545 TCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||| ||||||||| || |||||| ||||| ||||||||||||||||| ||||| Sbjct 5518 TCGCTGTGCCACGGTTCAAGGTAGATCGCAAACGCGCCCTTGCGCTTGCCCCCGCC 5573 Score = 143 bits (158), Expect = 3e-28 Identities = 333/498 (67%), Gaps = 17/498 (3%) Strand=Plus/Plus Query 1626983 GGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGG 1627042 |||| || || |||| | ||||| || |||| | | |||||| |||||||| || | Sbjct 4106 GGTCCACAGTGAACTTCACCGCGTCCGCCGCGGCGCGCGAGCGCAGGTAGTACATCCCCG 4165 Query 1627043 TCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGT-CGCG 1627101 |||| || || ||| |||||| ||||| ||||||| || | |||| |||| Sbjct 4166 TCTTCAGCCCCTTCTTCCAGGCGTAGAAGTGCAGGGACGTGA-GCTTCCCCGCGTTCGCG 4224 Query 1627102 TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGCC 1627161 || | || || ||||| |||||||| ||||||| | | | || ||||| ||| Sbjct 4225 TCCGACATGTGCACGTTGAAGGACTGGCTTTGGTCGATGAACGCGCCTCGGTCGGCGGCC 4284 Query 1627162 ATGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGTCG 1627221 ||||| | || || | | ||||||||||| ||| | || |||||||| || Sbjct 4285 ATGTCCACAAGCACGCGCTGCTTGATTTCCCACACGGTTTTGTAAATCGCCTTGAGTTC- 4343 Query 1627222 GGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCCTGTCG 1627281 |||| | | | | ||| ||||| ||||| | || ||| |||| Sbjct 4344 --------CTCGGGGATGTCCAGGCCTTGCACGCTGCCGTTGTTGGAGATGAG---GTCG 4392 Query 1627282 --CGAAAGTCGGGCGTCC-ACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTG 1627338 | ||| || |||| ||| || | || ||| | | |||||| ||| Sbjct 4393 TTCTTGAGTGAGGGGTCCCACAACCCTAGTTCCGTCAAATCCGAAAGAAGGTGGTTGTTC 4452 Query 1627339 ACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCG 1627398 |||||||| || || || || ||||| || | | |||||||||| ||||| | ||| Sbjct 4453 ACCACGGTGAACTCTCCGGAAAGCACCCGTCTGGCGTAGATGTTGCTGGTGTAGGGTTCG 4512 Query 1627399 CACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGG 1627458 | |||| ||||||||||||| |||||||||| || ||||||||| | |||||||| Sbjct 4513 AAGCACTCGTTGTTGCCCAGGATTTGCGACGTCGACGCGGTGGGCATGGGAGCCACGAGA 4572 Query 1627459 AGCGAGTTGCGCAGGCCG 1627476 |||||||| |||| |||| Sbjct 4573 AGCGAGTTCCGCACGCCG 4590 >seq564 Length=17261 Score = 143 bits (158), Expect = 3e-28 Identities = 222/312 (71%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||||||||| ||||| |||||||||||||| || || | |||||||| | |||||| Sbjct 9563 GTACTCGCCTACGCGTTTTTCGAAAAAGTTGGTTTTACCTTGAAGCGAGATGAGCTCCAT 9504 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGC-GACGCGAGCAGGC 868817 ||| ||||||||| | || ||||| | |||||| |||||| | | | |||| | Sbjct 9503 CCAGTCGAACGGGTTCGCGGTGTTGTATTCCTTTTCCAGCCCGAGCTGGCAC-AGCAAGT 9445 Query 868818 GGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCA 868877 | || ||||| ||||||||||| | |||| || | ||||||||| | || | || Sbjct 9444 GATCCGCGACGAACTCGATGTAGTCCGACATCAGCTCTTTGTTCATGCCCACCAGGGACA 9385 Query 868878 CCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCC 868937 | ||||| | |||| || |||||||| || ||||| ||||| || | | ||||||| Sbjct 9384 CGGGCAGTGCGTCGCACAGGAACTCTTTTTCAATCTCCACGGCTTCCATCACGATCTGCT 9325 Query 868938 TGGGCACGTCGGCCGAGGGCTTGTTG-ACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCG 868996 | |||| || | || |||||| | || | | |||| | |||||| || || || Sbjct 9324 TCACCACGGCGACGTCCGGTTTGTTGTTCAAGTAGC-TGTACAACAGGCACGCGAAATCA 9266 Query 868997 CAGTGCAACCCT 869008 | ||| | |||| Sbjct 9265 CGGTGAAGCCCT 9254 Score = 95.1 bits (104), Expect = 1e-13 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 869690 TGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCG 869749 |||||||| ||||||| || || | ||||| ||| ||||| |||||| |||||| Sbjct 8507 TGGACCTCGCTCATGAAGCGAACGCCGAGGTTTTCGAGGACGATACCGTCGGACGCGGCG 8448 Query 869750 AAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGG 869809 || || || |||| |||| ||| ||||| |||||| ||||| || | ||||||| Sbjct 8447 AAGAAGGCGAGGATGTGCGAGATGAAGTGCTTCTCGTCATCGCTCAGGGTTTCCCAGTGC 8388 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGC 869841 | ||||| || ||||| ||||||||||| Sbjct 8387 TTGATGTCGTCGGAAAGGTCAACCTCCTCGGC 8356 Score = 89.7 bits (98), Expect = 6e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| ||||| | |||||| ||| | || |||||||| | |||||||| Sbjct 9256 CCTTCGTCGCGGCTGATGAGCTCGTTGGAAAACGTCAGCCCGGGCATCAACCCGCGCTTT 9197 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||| |||||| || ||||| || | ||||||| | || || Sbjct 9196 TTCAGCCAGTAGATGCTGCAGAACGACCCGGAGAAGAAAACACCCTCGATGCACGCGAAC 9137 Query 869300 CCGATGAGCCGCTCGGCAAAGG 869321 ||||||| |||||||| |||| Sbjct 9136 GCGATGAGTCGCTCGGCGAAGG 9115 >seq356 Length=20797 Score = 96.9 bits (106), Expect = 4e-14 Identities = 199/295 (67%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 507620 GGCGACGCCGTGGTGATGAACCGGCAGCCGTCGCTGCACA---TGGGCTCCATGCTCATG 507676 |||||| |||| || | ||||||||||| ||| |||| | || || |||| | Sbjct 9830 GGCGACTGCGTGTTGTTTAACCGGCAGCCTTCGTTGCATAAGATGAGCATCATGGG---G 9886 Query 507677 CACAAGGTGGTGCCCATGCCCGGGCGCACCATGCGATTCAACCTGGCCGTCACGGGCACC 507736 ||| ||| | |||||| |||| | || | ||| | |||||||| | Sbjct 9887 CACCGCGTGCGGATCATGCCGTACAGCACGTTCCGCATGAACATTTCCGTCACGCCGCCG 9946 Query 507737 TACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCG 507796 ||||||||||| || |||||||||||||||||| ||||| |||| |||||| | || Sbjct 9947 TACAACGCCGATTTCGACGGCGACGAGATGAACATGCACCTGCCGCAGTCCATGGAAACG 10006 Query 507797 CGCGCCGAGGTGACGCACACCATGAGCGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAAC 507856 || || |||||| | | |||| || || | || |||||| |||||||| ||| Sbjct 10007 CGGGCGGAGGTGCAGGAGCTGATGATGGTCCCGAAGATGATCGTGTCTCCGCAGGCGAAC 10066 Query 507857 AAGCCCATCATCGGCCTGGTCATGGACGCCCTCGTCGGCTGCGGCTTCCTCACGA 507911 || || |||| | |||| |||| |||| | | |||| | || | |||| Sbjct 10067 AAACCTGTCATGGCGGTGGTGCAGGACACCCTGCTTGCCTGCAGGTTGATGACGA 10121 >seq450 Length=20130 Score = 89.7 bits (98), Expect = 6e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 732342 ACGCACGTCGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTC 732401 |||||| |||| | |||||| | || |||||| ||||||||||||||||||||| Sbjct 6034 ACGCACTGCGAGATCCACCCGAGCATGATTCTCGGGATCTGCGCGTCCATCATCCCGTTT 5975 Query 732402 TCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 732455 || | ||||||||| | |||||||||| ||||| | || ||||| || ||| Sbjct 5974 CCCGATCACAACCAGTCCCCGCGCAACACGTACCAAAGCGCGATGGGGAAACAG 5921 >seq856 Length=25904 Score = 86.0 bits (94), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 1671593 CCACGGACATCCGTTGGCACGCGCCCACTGAAGCACTGCCAGGTGGCCGCCCTCGGCCGC 1671652 ||||||||||||||| ||| |||||||||| ||||| | ||||| ||||||| ||||| Sbjct 76 CCACGGACATCCGTTCGCATGCGCCCACTGCAGCACCTCGAGGTGCCCGCCCTGCGCCGC 135 Query 1671653 TGCGTCGCATGTCCT 1671667 | ||| ||||||||| Sbjct 136 TACGTTGCATGTCCT 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107051472853873